View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_29 (Length: 462)

Name: NF15302_high_29
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_29
NF15302_high_29
[»] chr1 (18 HSPs)
chr1 (14-462)||(51420099-51420550)
chr1 (83-220)||(30788347-30788483)
chr1 (11-72)||(30788451-30788512)
chr1 (132-217)||(37639343-37639429)
chr1 (154-215)||(33097409-33097471)
chr1 (128-217)||(35198155-35198245)
chr1 (155-215)||(51801734-51801795)
chr1 (104-217)||(28323275-28323396)
chr1 (154-215)||(44260522-44260584)
chr1 (170-217)||(13590469-13590516)
chr1 (154-215)||(31529665-31529727)
chr1 (154-215)||(44688610-44688672)
chr1 (168-215)||(2741040-2741087)
chr1 (154-217)||(11421596-11421660)
chr1 (154-217)||(19897760-19897824)
chr1 (154-217)||(28375466-28375530)
chr1 (154-217)||(49936937-49937001)
chr1 (154-217)||(50351805-50351869)
[»] chr2 (11 HSPs)
chr2 (40-217)||(5098718-5098896)
chr2 (127-217)||(25995288-25995379)
chr2 (120-217)||(4281754-4281852)
chr2 (124-217)||(36636907-36637001)
chr2 (157-215)||(39548046-39548105)
chr2 (160-214)||(40853685-40853740)
chr2 (73-115)||(5098864-5098906)
chr2 (158-215)||(13081864-13081922)
chr2 (170-214)||(24024641-24024685)
chr2 (154-219)||(34464711-34464777)
chr2 (158-217)||(2263575-2263635)
[»] chr5 (10 HSPs)
chr5 (14-140)||(35915444-35915570)
chr5 (133-218)||(18465535-18465621)
chr5 (124-217)||(33868157-33868251)
chr5 (127-219)||(16668767-16668860)
chr5 (157-217)||(16552642-16552703)
chr5 (155-214)||(4674965-4675025)
chr5 (170-214)||(15913148-15913192)
chr5 (120-219)||(25017183-25017282)
chr5 (133-217)||(34329129-34329213)
chr5 (170-214)||(7183142-7183186)
[»] chr6 (4 HSPs)
chr6 (133-221)||(18611186-18611275)
chr6 (170-217)||(32556346-32556393)
chr6 (104-169)||(34399691-34399756)
chr6 (154-217)||(31216664-31216728)
[»] chr3 (15 HSPs)
chr3 (104-179)||(17627181-17627257)
chr3 (154-217)||(47728390-47728454)
chr3 (154-217)||(51682002-51682066)
chr3 (170-219)||(32232991-32233040)
chr3 (127-217)||(23699329-23699420)
chr3 (127-217)||(23717784-23717875)
chr3 (127-217)||(23736240-23736331)
chr3 (154-215)||(53594972-53595034)
chr3 (161-217)||(23755287-23755344)
chr3 (127-189)||(19385288-19385351)
chr3 (154-215)||(37319460-37319522)
chr3 (172-214)||(41568836-41568878)
chr3 (154-217)||(26662538-26662602)
chr3 (154-217)||(28299952-28300016)
chr3 (154-217)||(33414013-33414077)
[»] chr4 (11 HSPs)
chr4 (154-217)||(25574128-25574192)
chr4 (158-217)||(24686574-24686634)
chr4 (154-215)||(16298925-16298987)
chr4 (120-217)||(50563695-50563792)
chr4 (154-217)||(10472499-10472563)
chr4 (154-205)||(26578189-26578241)
chr4 (154-216)||(1729615-1729678)
chr4 (127-189)||(26447385-26447448)
chr4 (172-214)||(2848128-2848170)
chr4 (154-217)||(13635725-13635789)
chr4 (154-217)||(49492512-49492576)
[»] chr7 (11 HSPs)
chr7 (128-217)||(5757388-5757478)
chr7 (133-217)||(44141230-44141315)
chr7 (170-217)||(6797402-6797449)
chr7 (157-219)||(46346719-46346782)
chr7 (154-215)||(34875493-34875555)
chr7 (157-217)||(39007652-39007713)
chr7 (104-217)||(12279747-12279860)
chr7 (154-217)||(16933244-16933308)
chr7 (154-217)||(16938627-16938691)
chr7 (154-217)||(27335629-27335692)
chr7 (128-179)||(33797970-33798022)
[»] scaffold0337 (1 HSPs)
scaffold0337 (104-192)||(7043-7132)
[»] chr8 (8 HSPs)
chr8 (152-215)||(40247283-40247347)
chr8 (170-217)||(2522869-2522916)
chr8 (154-217)||(12355424-12355488)
chr8 (154-215)||(13526671-13526733)
chr8 (154-215)||(13616206-13616268)
chr8 (120-217)||(15181792-15181890)
chr8 (170-215)||(10443587-10443632)
chr8 (154-217)||(30413916-30413980)
[»] scaffold0460 (1 HSPs)
scaffold0460 (170-217)||(1606-1653)
[»] scaffold0012 (1 HSPs)
scaffold0012 (170-217)||(119204-119251)
[»] scaffold0006 (1 HSPs)
scaffold0006 (170-217)||(209328-209375)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 51420550 - 51420099
Alignment:
Q  14 agaaagagaacatgatagagacagagacgtcagagcaaatctgatggttgtgagagtgtagggtgagccacgtcggagcaaatatgatggttgtgagagt 113  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51420550 agaaagagaacgtgatagagacagagacgtcggagcaaatctgatggttgtgagagtgtagggtgagtcacgtcggagcaaatatgatggttgtgagagt 51420451  T
Q  114 gtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaatgtttatgcaggatgcataaagaattgacttatgcataataact 213  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420450 gtgagctgagagacctaggattattactcgtgtataataaatctgatggttgtgaatgtttatgcaggatgcataaagaattgacttatgcataataact 51420351  T
Q  214 tttgtcaacaataaataacttaaattttttgacaaatttcgaaatatacaaatatttaatattgtacaaccttctataagt-aaaggta--tccatatct 310  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||    
T  51420350 tttgtcaacaataaaaaatttaaattttttgacaaatttcgaaatatacaaatatttaatattgtacaaccttctataagtaaaaggtatgtccatatct 51420251  T
Q  311 caccctgcctttttggtaacacccaccctgcttaaataaagaaataaactattaggaatgaaatccttttttgttgagaaggccataatggactttgtag 410  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420250 caccctgcttttttggtaacacccaccctgcttaaataaagaaataaactattaggaatgaaatccttttttgttgagaaggccataatggactttgtag 51420151  T
Q  411 ggtgagagcttatccaaatgtgtgggtgccaagaatatgccacatcattcat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420150 ggtgagagcttatccaaatgtgtgggtgccaagaatatgccacatcattcat 51420099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 30788483 - 30788347
Alignment:
Q  83 acgtcggagcaaatatgatggttgtgagagtgtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaatgtttatgcagga 182  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| |||| || |||||||||||||  | |||||||      
T  30788483 acgtcagagcaaatctgatggttgtgagagtgtgagctgagagacctagaattattatacgtgtacaataaatatgatggttgtgaa-atgtatgcagac 30788385  T
Q  183 tgcataaagaattgacttatgcataataacttttgtca 220  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  30788384 tgcataaggaaatgacttatgcataataacttttgtca 30788347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 30788512 - 30788451
Alignment:
Q  11 cagagaaagagaacatgatagagacagagacgtcagagcaaatctgatggttgtgagagtgt 72  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30788512 cagagaaagagaacgtgatagagacagagacgtcagagcaaatctgatggttgtgagagtgt 30788451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 37639429 - 37639343
Alignment:
Q  132 aattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||||| |||||| | || |||||||||||||||| |||||||||||| ||||||| ||| || ||||||||||||||||||||    
T  37639429 aattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttg 37639343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 33097471 - 33097409
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||    
T  33097471 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 33097409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 35198155 - 35198245
Alignment:
Q  128 ctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||| |||||||| |||||| | || ||||||||| |||||| |||||||||||| ||||||| ||| || ||||||||||||||||||||    
T  35198155 ctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttg 35198245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 51801734 - 51801795
Alignment:
Q  155 tctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    ||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||    
T  51801734 tctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 51801795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 28323275 - 28323396
Alignment:
Q  104 ttgtgagagtgtgagctgagagacctagaattattactcgtgtataa---taca----tctgatggttgtgaa-tgtttatgcaggatgcataaagaatt 195  Q
    ||||||||||| ||||||| | |||||| |||||||| |||||| ||   ||||    ||||||||||||| | |||||||| ||| |||||||| || |    
T  28323275 ttgtgagagtgcgagctgataaacctaggattattacacgtgtaaaacattacacaaatctgatggttgtgtagtgtttatggagggtgcataaaaaaat 28323374  T
Q  196 gacttatgcataataacttttg 217  Q
    ||||||||||||||||||||||    
T  28323375 gacttatgcataataacttttg 28323396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 44260584 - 44260522
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||| ||||||| ||| ||||||| |||||||||||||    
T  44260584 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataacttt 44260522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 13590516 - 13590469
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  13590516 tgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 13590469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 31529665 - 31529727
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||| | ||||||| ||| || ||||||||||||||||||    
T  31529665 atctgatggttgtgaagtgtttatgcatggtgcataaggaaatggcttatgcataataacttt 31529727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 44688610 - 44688672
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||  ||||||| ||| |||||||||||| ||||||||    
T  44688610 atctgatggttgtgaagtgtttatgcagcgtgcataaggaaatgacttatgcatgataacttt 44688672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 2741087 - 2741040
Alignment:
Q  168 aatgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||  | ||||||||| |||||||||||||||||||||    
T  2741087 aatgtttatgcagagtacataaagaaatgacttatgcataataacttt 2741040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 11421660 - 11421596
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||| |||||||||| | ||||||| ||| ||| |||||||  ||||||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataaggaaatgatttatgcaccataacttttg 11421596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 19897760 - 19897824
Alignment:
Q  154 atctgatggttgtga-atgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||||||||||| ||||||||||| | ||||||| ||| | |||||||||  ||||||||||    
T  19897760 atctgatggttgtgatatgtttatgcacggtgcataaggaaataacttatgcaccataacttttg 19897824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 28375530 - 28375466
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||||||| | |||||||||  ||||||||||    
T  28375530 atctgatggttgtgatgtgtttatgcacggtgcataaagaaataacttatgcaccataacttttg 28375466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 49936937 - 49937001
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  49936937 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 49937001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 50351869 - 50351805
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  50351869 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 50351805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 5098896 - 5098718
Alignment:
Q  40 acgtcagagcaaatctgatggttgtgagagtgtagggtgagccacgtcggagcaaatatgatggttgtgagagtgtgagctgagagacctagaattatta 139  Q
    ||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5098896 acgtcggagcaaatatgatggttgtgaaagtgtagggtgagtcacgtcggagcaaatctgatggttgtgagagtgtgagctgagagacctaggattatta 5098797  T
Q  140 ctcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    | |||||| |||| || ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  5098796 cacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 5098718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 25995379 - 25995288
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||||| |||||| | || |||||||||||||||| | |||||||||  ||||||| ||| || ||||||||||||||||||||    
T  25995379 cctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgcagagtgcataaggaaatgtcttatgcataataacttttg 25995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 4281754 - 4281852
Alignment:
Q  120 tgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||| |||||||| |||||| | || |||||||||||||||| ||||||| |||  | ||||| ||| || ||||||||||||||||||||    
T  4281754 tgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatacagagtacataaggaaatgtcttatgcataataacttttg 4281852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 36636907 - 36637001
Alignment:
Q  124 agacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||| ||| |||||||| |||||| || | |||||||||||||||| |||||||| ||| | |||||  || |||||||||||||||||||||||    
T  36636907 agacttaggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataacttttg 36637001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 39548105 - 39548046
Alignment:
Q  157 tgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    ||||||||||||| |||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  39548105 tgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgtataataacttt 39548046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 40853685 - 40853740
Alignment:
Q  160 tggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||||| |||||||||||||||||||| ||| || |||||||||||||||||    
T  40853685 tggttgtgaagtgtttatgcaggatgcataaggaaatggcttatgcataataactt 40853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 5098906 - 5098864
Alignment:
Q  73 agggtgagccacgtcggagcaaatatgatggttgtgagagtgt 115  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  5098906 agggtgagtcacgtcggagcaaatatgatggttgtgaaagtgt 5098864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 13081864 - 13081922
Alignment:
Q  158 gatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||| |||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  13081864 gatggttgtgaagtgtttatgtagggtgcataatgaaatgacttatgcataataacttt 13081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 24024641 - 24024685
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||    
T  24024641 tgtttatgcatggtgcataaggaattgacttatgcataataactt 24024685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 34464777 - 34464711
Alignment:
Q  154 atctgatggttgtga-atgtttatgcaggatgcataaagaattgacttatgcataataacttttgtc 219  Q
    ||||||||||||||| ||||||||||| | ||||||| ||| | |||||||||  ||||||||||||    
T  34464777 atctgatggttgtgatatgtttatgcacggtgcataaggaaataacttatgcaccataacttttgtc 34464711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 2263635 - 2263575
Alignment:
Q  158 gatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| |||||||||| | ||||||||||| || ||||||||  ||||||||||    
T  2263635 gatggttgtgaagtgtttatgcacggtgcataaagaaatggcttatgcaccataacttttg 2263575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 35915570 - 35915444
Alignment:
Q  14 agaaagagaacatgatagagacagagacgtcagagcaaatctgatggttgtgagagtgtagggtgagccacgtcggagcaaatatgatggttgtgagagt 113  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |  ||||| ||||||||| ||||||||||||||||    
T  35915570 agaaagagaacgtgatagagacagagacgtcaaagcaaatctgatagttgtgagagtgtagggtaaatcacgttggagcaaatctgatggttgtgagagt 35915471  T
Q  114 gtgagctgagagacctagaattattac 140  Q
    |||||||||||||||||||||||||||    
T  35915470 gtgagctgagagacctagaattattac 35915444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 18465535 - 18465621
Alignment:
Q  133 attattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttgt 218  Q
    |||||||| |||||| | || |||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  18465535 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcaggatgcataatgaaatgtcttatgcataataacttttgt 18465621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 33868251 - 33868157
Alignment:
Q  124 agacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||| |||||||| | |||| |||| ||| |||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  33868251 agacctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 33868157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 16668767 - 16668860
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttgtc 219  Q
    ||||| |||||||| |||||| | || |||||||||||||||| |||||||||||| ||||||| ||| || ||||||||||||||||||||||    
T  16668767 cctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttgtc 16668860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 16552642 - 16552703
Alignment:
Q  157 tgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||||||    
T  16552642 tgatggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcataataacttttg 16552703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 4675025 - 4674965
Alignment:
Q  155 tctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||||| ||||||||||||    
T  4675025 tctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 4674965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 15913148 - 15913192
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15913148 tgtttatgcaggatgcataaggaactgacttatgcataataactt 15913192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 25017183 - 25017282
Alignment:
Q  120 tgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttgt 218  Q
    ||||| ||||| ||||||||| |||||| | || |||||||||||||||| |||||||||| | ||||| ||| |||  ||||||||  |||||||||||    
T  25017183 tgagaaacctaaaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttatgcaccataacttttgt 25017281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 34329213 - 34329129
Alignment:
Q  133 attattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||| ||||||| | || |||||||||||||||| |||||||||| | ||||||||| |||  ||||||||  ||||||||||    
T  34329213 attattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaag-atttccttatgcaccataacttttg 34329129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 7183186 - 7183142
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||||||  ||||||| ||| ||||||||||||||||||||    
T  7183186 tgtttatgcagtgtgcataaggaactgacttatgcataataactt 7183142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 18611275 - 18611186
Alignment:
Q  133 attattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttgtcaa 221  Q
    |||||||| |||||| | || |||||||||||||||| |||||||||||  ||||||||||| || ||||||||||||||||||||||||    
T  18611275 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcagagtgcataaagaaatgtcttatgcataataacttttgtcaa 18611186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 32556393 - 32556346
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| |||||||  || |||||||||||||||||||||||    
T  32556393 tgtttatgcagggtgcataagaaaatgacttatgcataataacttttg 32556346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 34399756 - 34399691
Alignment:
Q  104 ttgtgagagtgtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaa 169  Q
    |||||||||||||| ||||||  ||||| |||||||| |||||| | || |||||||| |||||||    
T  34399756 ttgtgagagtgtgaactgagaagcctaggattattacacgtgtacactagatctgatgattgtgaa 34399691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 31216728 - 31216664
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  31216728 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 31216664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 17627181 - 17627257
Alignment:
Q  104 ttgtgagagtgtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgca 179  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| | || |||||||||||||||| ||||||||||    
T  17627181 ttgtgagagtgtgagctgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 17627257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 47728454 - 47728390
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||| |||||||||||| |||||||  || |||||||||||||||||||||||    
T  47728454 atctgatggttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataacttttg 47728390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 51682002 - 51682066
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| ||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  51682002 atctgatggttgcgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 51682066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 32233040 - 32232991
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttgtc 219  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  32233040 tgtttatgcagggtgcataaggaaatgacttatgcataataacttttgtc 32232991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 23699420 - 23699329
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||||| |||||| | || || ||||||||||||| |||||||||||| || ||||  || || ||||||||||||||||||||    
T  23699420 cctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttttg 23699329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 23717875 - 23717784
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||||| |||||| | || || ||||||||||||| |||||||||||| || ||||  || || ||||||||||||||||||||    
T  23717875 cctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttttg 23717784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 23736331 - 23736240
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||||| |||||| | || || ||||||||||||| |||||||||||| || ||||  || || ||||||||||||||||||||    
T  23736331 cctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataacttttg 23736240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 53595034 - 53594972
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||| |||||||  || || ||||||||||||||||||    
T  53595034 atctgatggttgtgaagtgtttatgcagggtgcataagaaaatggcttatgcataataacttt 53594972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 23755344 - 23755287
Alignment:
Q  161 ggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||||| |||||||||||| ||||||| ||| || ||||||||||||||||||||    
T  23755344 ggttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataacttttg 23755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 19385288 - 19385351
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataa 189  Q
    |||||||||||||| |||||| | || |||||||||||||||| |||||||||| | |||||||    
T  19385288 cctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataa 19385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 37319460 - 37319522
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    ||||||||  |||||| |||||||||||| |||||||  || |||||||||||||||||||||    
T  37319460 atctgatgaatgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataacttt 37319522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 41568878 - 41568836
Alignment:
Q  172 tttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  41568878 tttatgcatggtgcataaggaattgacttatgcataataactt 41568836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 26662538 - 26662602
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| || |||||||| |||||||||||    
T  26662538 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcacaataacttttg 26662602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 28299952 - 28300016
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||| |||||||| |||||||||| | | ||||| ||| ||||||||||||||||| |||||    
T  28299952 atctgatagttgtgaagtgtttatgcatggtacataaggaaatgacttatgcataataatttttg 28300016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 33414013 - 33414077
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  33414013 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 33414077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 25574128 - 25574192
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  25574128 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 25574192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 24686634 - 24686574
Alignment:
Q  158 gatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  24686634 gatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 24686574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 16298987 - 16298925
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| || ||||||||| ||||||| ||| |||||||||||||||||||||    
T  16298987 atctgatggttgtgaagtgattatgcagggtgcataaggaaatgacttatgcataataacttt 16298925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 50563695 - 50563792
Alignment:
Q  120 tgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| ||||| ||||||||| |||||| | || |||||||||||||||| |||||||||||| ||||| | ||| |  ||||||||||||||||||||    
T  50563695 tgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcat-atgaaatatcttatgcataataacttttg 50563792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 10472563 - 10472499
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||| |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  10472563 atctgatggttgtgaaatgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 10472499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 26578189 - 26578241
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgca 205  Q
    |||||||||||||||| |||||||||| ||||||||||||| || ||||||||    
T  26578189 atctgatggttgtgaagtgtttatgcacgatgcataaagaaatggcttatgca 26578241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 1729615 - 1729678
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataactttt 216  Q
    |||||||||||||||| |||||||||| | || |||||||| |||||||||||  |||||||||    
T  1729615 atctgatggttgtgaagtgtttatgcacggtgtataaagaaatgacttatgcaccataactttt 1729678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 26447385 - 26447448
Alignment:
Q  127 cctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataa 189  Q
    |||||||||||||| |||||| | || |||||||||||||||| |||||||||| | |||||||    
T  26447385 cctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 26447448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 2848128 - 2848170
Alignment:
Q  172 tttatgcaggatgcataaagaattgacttatgcataataactt 214  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||    
T  2848128 tttatgcagggtgcataaggaactgacttatgcataataactt 2848170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 13635725 - 13635789
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  13635725 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 13635789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 49492512 - 49492576
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  49492512 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 49492576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 5757478 - 5757388
Alignment:
Q  128 ctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||| |||||||| |||||| | || |||||||||||||||| |||||||||| | ||||||| ||| || ||||||||||||||||||||    
T  5757478 ctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggaaatgtcttatgcataataacttttg 5757388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 44141230 - 44141315
Alignment:
Q  133 attattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||| |||||| | || ||| |||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||||||||||    
T  44141230 attattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcatgataacttttg 44141315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 6797402 - 6797449
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  6797402 tgtttatgcaggatgcataaggaaatgacttatgcataataacttttg 6797449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 46346719 - 46346782
Alignment:
Q  157 tgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttgtc 219  Q
    ||||||||||||| ||||||| ||||||||||||  || |||||||||||||||||||||||||    
T  46346719 tgatggttgtgaagtgtttatacaggatgcataagaaaatgacttatgcataataacttttgtc 46346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 34875555 - 34875493
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||| ||||||| ||| || ||||||||||||||||||    
T  34875555 atctgatggttgtgaagtgtttatgcagggtgcataaggaaatggcttatgcataataacttt 34875493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 39007652 - 39007713
Alignment:
Q  157 tgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  39007652 tgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacctttg 39007713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 12279860 - 12279747
Alignment:
Q  104 ttgtgagagtgtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttat 202  Q
    |||||| ||||||||||||||| ||||| || ||||| ||| || | || |||| ||||||||||| | |||||||| | ||||||||| |||  |||||    
T  12279860 ttgtgaaagtgtgagctgagaggcctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaag-atttccttat 12279762  T
Q  203 gcataataacttttg 217  Q
    |||  ||||||||||    
T  12279761 gcaccataacttttg 12279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 16933244 - 16933308
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  16933244 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 16933308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 16938627 - 16938691
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  16938627 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttg 16938691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 27335629 - 27335692
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||| |||||||||||| |||||||  || ||||||||  |||||||||||||    
T  27335629 atctgatggttgtgaagtgtttatgcagg-tgcataagaaaatgacttatttataataacttttg 27335692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 33798022 - 33797970
Alignment:
Q  128 ctagaattattactcgtgtataatacatctgatggttgtg-aatgtttatgca 179  Q
    |||| |||||||| |||||||| || |||||||||||||| ||||||||||||    
T  33798022 ctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgca 33797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 7132 - 7043
Alignment:
Q  104 ttgtgagagtgtgagctgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaaga 192  Q
    ||||||||||||||||||||| |||||| ||||||||  ||||| | || |||||||||||||||| |||||||||| | || |||||||    
T  7132 ttgtgagagtgtgagctgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaaga 7043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 40247283 - 40247347
Alignment:
Q  152 acatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||    
T  40247283 acatgtgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttt 40247347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 2522916 - 2522869
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  2522916 tgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 2522869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 12355488 - 12355424
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||| ||||||||||| |||||||||||| |||||||  || |||||||||| ||||||||||||    
T  12355488 atctaatggttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcgtaataacttttg 12355424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 13526671 - 13526733
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||  | ||||| ||| || ||||||||||||||||||    
T  13526671 atctgatggttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataacttt 13526733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 13616206 - 13616268
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||||||| |||||||||||  | ||||| ||| || ||||||||||||||||||    
T  13616206 atctgatggttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataacttt 13616268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 15181890 - 15181792
Alignment:
Q  120 tgagagacctagaattattactcgtgtataatacatctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    ||||| |||||  |||||||| |||||| | || |||||||| ||||||| |||||||||||| ||||||| |||     |||||||||||||||||||    
T  15181890 tgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgcagggtgcataaggaaacatattatgcataataacttttg 15181792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 10443587 - 10443632
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttt 215  Q
    |||||||||||| ||||||| ||| || ||||||||||||||||||    
T  10443587 tgtttatgcagggtgcataaggaaatggcttatgcataataacttt 10443632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 30413980 - 30413916
Alignment:
Q  154 atctgatggttgtgaa-tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||||||  |||||||||| | ||||||| ||| |||||||||||  ||||||||||    
T  30413980 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcagcataacttttg 30413916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 1653 - 1606
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  1653 tgtttatgcagggtgcataaggaaatgacttatgcataataatttttg 1606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 119251 - 119204
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  119251 tgtttatgcagggtgcatatagaaatgacttatgtataataacttttg 119204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 209375 - 209328
Alignment:
Q  170 tgtttatgcaggatgcataaagaattgacttatgcataataacttttg 217  Q
    |||||||||||| |||||||  || |||||||||||||||||||||||    
T  209375 tgtttatgcagggtgcataagaaaatgacttatgcataataacttttg 209328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University