View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_30 (Length: 458)
Name: NF15302_high_30
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 104 - 417
Target Start/End: Complemental strand, 36946755 - 36946444
Alignment:
| Q |
104 |
taacaaaagaaaattcaattcataatcgtaagaaccaaattaacctttgttgaataacgctgagttacagctaggaatttgtcactcgaatggagacctg |
203 |
Q |
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| T |
36946755 |
taacaaaagaaaattcaattcataatcgtaagaaccaaattaacctttgttgaataacgctgagttacagctaggaatttgtcactcgaatggagacctg |
36946656 |
T |
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| Q |
204 |
gacacattcacataatttgtctgctaggaaaacattgttaaggtatagggttttgtaaaagtacgtnnnnnnnnnnnntgagagttaaggtatagtgtca |
303 |
Q |
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| T |
36946655 |
gacacattcacataatttgtctgctaggaaaacattgttaaggtatagggttttgtaaaaatacgtaaaaataaaaaatgagagttaaggtatagtgtca |
36946556 |
T |
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| Q |
304 |
aatcaattgaatatcacatggagcaaagctaaagttttaagagctgctaaaaattggtggggttatggacttatatggtctggagcttgtttttgcaata |
403 |
Q |
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| T |
36946555 |
aatcaattgaatatcacatggagcaaagctaaagttttaagagctgctaaaaattggtggggttatggact--tatggtctggagcttgtttttgcaata |
36946458 |
T |
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| Q |
404 |
gtaacagtttcttc |
417 |
Q |
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| T |
36946457 |
gtaacagtttcttc |
36946444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36946884 - 36946836
Alignment:
| Q |
1 |
ccactattctgtcttttttcattttaactcggtcaacataatgatgctc |
49 |
Q |
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| T |
36946884 |
ccactattctgtcttttttcattttaactcggtcaacataatgatgctc |
36946836 |
T |
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