View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_high_31 (Length: 457)
Name: NF15302_high_31
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Original strand, 50152765 - 50153191
Alignment:
| Q |
15 |
atgaatgtagtcacatgtgtcaatgtcatgtcggagataccaacatgcgtcgaacatcggacagttcgatcaaaggtgtcggtgttacata----ctcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
50152765 |
atgaatgtagtcacatgtgtcaatgtcatgtcggagataccaacatgcatcggacaccggacagttcgatcaaag-tgtcggtgttacatagatactcac |
50152863 |
T |
|
| Q |
111 |
taatgtatgaacactatagtgagtgtttgtaccctcttagaagtttggcacaaagctatgaaatgattcatttattctattgcaaaggactcagaattct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50152864 |
taatgtatgaacactatagtgagtgtttgtaccctcttagaagtttggcacaaagatatgaaatgattcatttattctattgcaaaggactcaaaattct |
50152963 |
T |
|
| Q |
211 |
tgccctaacataattcagttgctacttcctcattgcttagattttttctccttaattgcttcttacacagtaggactatatatctttgatgaagtttctg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
50152964 |
tgccctaacataattcagttgctacttcctcattgcttagattttttctccttaattgcttcttaaacagtatgactatatatctttgatgaagtttctg |
50153063 |
T |
|
| Q |
311 |
gtaatatactttgtttttatgaggtttctgataacatactgtgttttttatattagaaaatgaatttatggccttctgtccgttttgccctcgctgccta |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50153064 |
gtaatatactttgtttttacgaggtttctggtaacatactgtgttttttatattacaaaatgaatttatggccttctgtccgttttgccctcgctgccta |
50153163 |
T |
|
| Q |
411 |
cactattcctctttgattgtttcgaggg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
50153164 |
cactattcctctttgattgtttcgaggg |
50153191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University