View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_36 (Length: 427)

Name: NF15302_high_36
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_36
NF15302_high_36
[»] chr3 (24 HSPs)
chr3 (44-427)||(46553725-46554099)
chr3 (49-353)||(46532134-46532433)
chr3 (258-363)||(46544909-46545014)
chr3 (257-353)||(46535365-46535461)
chr3 (258-368)||(46539437-46539547)
chr3 (260-353)||(4580981-4581074)
chr3 (260-353)||(4613447-4613540)
chr3 (59-119)||(46236634-46236694)
chr3 (262-334)||(51944319-51944391)
chr3 (270-353)||(5160714-5160797)
chr3 (262-353)||(46480222-46480313)
chr3 (262-350)||(16025907-16025995)
chr3 (44-132)||(45883560-45883648)
chr3 (47-119)||(47397148-47397220)
chr3 (262-353)||(46491135-46491226)
chr3 (48-131)||(46539211-46539294)
chr3 (262-353)||(47413798-47413889)
chr3 (48-129)||(5160488-5160569)
chr3 (265-353)||(46526015-46526103)
chr3 (261-349)||(5156673-5156761)
chr3 (265-353)||(46498380-46498468)
chr3 (44-119)||(16025694-16025769)
chr3 (265-350)||(46548615-46548700)
chr3 (79-131)||(5156490-5156542)
[»] chr8 (4 HSPs)
chr8 (258-353)||(21463786-21463881)
chr8 (44-130)||(9675525-9675611)
chr8 (44-130)||(9692547-9692633)
chr8 (44-130)||(21464019-21464105)
[»] chr4 (4 HSPs)
chr4 (262-311)||(35155838-35155887)
chr4 (262-334)||(15556438-15556510)
chr4 (65-128)||(35162669-35162732)
chr4 (48-130)||(35155632-35155714)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 44 - 427
Target Start/End: Complemental strand, 46554099 - 46553725
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctccattatggatttc 143  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46554099 ttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaatagtagactctccattatggatttc 46554000  T
Q  144 caatataactcaaaagtctatcattaaagtaaatgaagtgggcacagaagctgccgcagtcactgttactggtatggtatagtgggatgtagtcagttta 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     || |||||||||||||||||    
T  46553999 caatataactcaaaagtctatcattaaagtaaatgaagtgggcacagaagctgccgcagtcactgttactgggat-----agcgggatgtagtcagttta 46553905  T
Q  244 cttctattccaaccccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46553904 cttctattccaaccccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctggtacaatactctttgttggccaagttct 46553805  T
Q  344 caatcctcttctgaagtgatattaattacccatacaaacaaacatccaatggatgtgtggatcaaatggatttagtttgtcgta 427  Q
    ||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||| |||||||||||    
T  46553804 caatcctcttctgaagtgatattaattacccataca----aacatcaaatggatgtgtggatcaaatggattgagtttgtcgta 46553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 49 - 353
Target Start/End: Original strand, 46532134 - 46532433
Alignment:
Q  49 cttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctccattatggatttccaata 148  Q
    ||||||||||||||| ||   |||||||| |||||  ||||||||||||||| ||||||||| |||||||| |  ||||||||  | ||| |||| || |    
T  46532134 cttgaactttctaatgtgtcaaaggagttaggagttgttttacctttctctggtggaggtttgacaaaaatggcggactctccgatttgggtttctaaca 46532233  T
Q  149 taactcaaaagtctatcattaaagtaaatgaagtgggcacagaagctgccgcagtcactgttactggtatggtatagtgggatgtagtcagtttacttct 248  Q
    ||  |||||| ||| ||||| |||||||||||   ||||| |||||||| |||||||||   |||||  |     | ||||||||  ||    ||||||     
T  46532234 tatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgcagtcactagaactggact-----attgggatgtgctcgtcctacttca 46532328  T
Q  249 attccaaccccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatc 348  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||||| || ||||| |||||||||| |||||||||||||||||||||||| |||||||    
T  46532329 attccgaccccaatagactttgtagctgaccaccctttcatgtttttgataagagacgatttgtctggtacaatactctttgttggccaagtgctcaatc 46532428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 46544909 - 46545014
Alignment:
Q  258 ccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctcttctga 357  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||  ||  |||||||| |||| ||||||||||||||||||||||    
T  46544909 ccgatagactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctcttctga 46545008  T
Q  358 agtgat 363  Q
    ||||||    
T  46545009 agtgat 46545014  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 46535365 - 46535461
Alignment:
Q  257 cccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||| |||||||| ||||||||| ||||| |  |||||||||    
T  46535365 cccgatagactttgtagctgaccatcctttcttgtttttgataagagaagatttatctggtacaatacactttgttgggcaagtgcataatcctctt 46535461  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 46539437 - 46539547
Alignment:
Q  258 ccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctcttctga 357  Q
    ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||  ||  |||||| | |||| |||||||| ||||||||| |||    
T  46539437 ccgattgactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctctattggacaagttctaaatcctcttgtga 46539536  T
Q  358 agtgatattaa 368  Q
     ||||| ||||    
T  46539537 tgtgatcttaa 46539547  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 4581074 - 4580981
Alignment:
Q  260 gatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||| ||||| ||||||||||||||||||||||| ||  |||||||||||||||  ||  |||||||  |||| ||||||||||||||||||    
T  4581074 gatagaatttgtggctgaccaccctttcttgtttttgatccgagaagatttgtctggaactgtactcttcattggacaagttctcaatcctctt 4580981  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 4613540 - 4613447
Alignment:
Q  260 gatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||  ||  |||||||  |||| ||||||||||||||||||    
T  4613540 gatagaatttgtggctgatcaccctttcttgtttttgatcagagacgatttgtctggaactgtactcttcattggacaagttctcaatcctctt 4613447  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 46236694 - 46236634
Alignment:
Q  59 ctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaat 119  Q
    |||||| | |||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  46236694 ctaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaat 46236634  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 51944319 - 51944391
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttgg 334  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||||||| |||  |||||  ||||||||||    
T  51944319 tagactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttgg 51944391  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 5160714 - 5160797
Alignment:
Q  270 gtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||||||||||||||||| ||| | ||||||||||||| | |||  || || ||||||||||| ||||| ||||||||||||    
T  5160714 gtagctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctctt 5160797  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 46480222 - 46480313
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||| ||| | |  |||||  |||||||||| || || ||||||||||||    
T  46480222 tagactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctctt 46480313  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 350
Target Start/End: Original strand, 16025907 - 16025995
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcct 350  Q
    |||| ||||||||||||||||||||||| ||| | ||||||||||||||  | |  ||||| |||||||| || ||||| |||||||||    
T  16025907 tagattttgtagctgaccaccctttcttatttctaattagagaagatttaaccgaaacaatcctctttgtagggcaagtactcaatcct 16025995  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 45883648 - 45883560
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctcca 132  Q
    |||||||||||  |||||||||| |||||||||| |||||| ||| ||||||||||  |||| |||| |||||||| || |||| ||||    
T  45883648 ttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtggaagtttgacaaaaatggtggactatcca 45883560  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 47397220 - 47397148
Alignment:
Q  47 ggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaat 119  Q
    ||||||||  |||| ||||| |||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  47397220 ggcttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaat 47397148  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 46491135 - 46491226
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||||||| |||| |||||||||||||||| | ||||||||||| ||| |||  |||||  |||||||||| || ||  |||||||||||    
T  46491135 tagactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctctt 46491226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 46539211 - 46539294
Alignment:
Q  48 gcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctcc 131  Q
    |||||||  |||||||||||| |||||| | ||| || |||||||||||||| | |||||||| |||||||| || ||||||||    
T  46539211 gcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggaggtttgacaaaaatggtggactctcc 46539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 47413889 - 47413798
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    ||||||||||||| |||||||||||||| ||| | |||||||||||||   | |  ||||| ||||||||||| || || ||||||||||||    
T  47413889 tagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttgttggacatgtgctcaatcctctt 47413798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 5160488 - 5160569
Alignment:
Q  48 gcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactct 129  Q
    |||||||  |||| |||||||||||||||| ||||||| |||||||||| ||  || |||||| |||||||| || ||||||    
T  5160488 gcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaaaaatggtggactct 5160569  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 46526103 - 46526015
Alignment:
Q  265 actttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctac-aatactctttgttggccaagttctcaatcctctt 353  Q
    |||||||||| ||||||| |||||||||| | ||||||||||||||| |||  || ||| ||||||||||| ||||| | ||||||||||    
T  46526103 actttgtagcagaccacc-tttcttgtttctaattagagaagatttgactggaacaaatcctctttgttggacaagtacccaatcctctt 46526015  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 5156673 - 5156761
Alignment:
Q  261 atagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcc 349  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||| | | | |||  || || ||||||||||| ||||| ||||||||    
T  5156673 atagactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatcc 5156761  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 46498380 - 46498468
Alignment:
Q  265 actttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    ||||||||||||||||||| ||||| ||| |||| |||||||||||| | |  || ||  |||||||||| || || ||||||||||||    
T  46498380 actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctctt 46498468  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 16025694 - 16025769
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaat 119  Q
    ||||| |||||  |||| |||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||||    
T  16025694 ttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctggaggtttgacaaaaat 16025769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 350
Target Start/End: Complemental strand, 46548700 - 46548615
Alignment:
Q  265 actttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcct 350  Q
    |||||||||||||||| |||||| ||||| | || | ||||||||  ||||  || ||||||||| |||| ||||| |||||||||    
T  46548700 actttgtagctgaccatcctttcatgtttatgatcaaagaagattcttctggaactatactctttattggacaagtgctcaatcct 46548615  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 5156490 - 5156542
Alignment:
Q  79 ggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctcc 131  Q
    |||||||||||||||||| ||  ||||||||| |||||||| || ||||||||    
T  5156490 ggagtgattttacctttcactcgtggaggtttgacaaaaatggtggactctcc 5156542  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 21463881 - 21463786
Alignment:
Q  258 ccgatagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttggccaagttctcaatcctctt 353  Q
    |||||| |||| |||||||| ||||||||||||||||| || |||||||||||||| |  || ||||||||| |||| ||||| ||||||||||||    
T  21463881 ccgataaacttcgtagctgatcaccctttcttgtttttgatcagagaagatttgtccggaaccatactctttattgggcaagtgctcaatcctctt 21463786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 9675611 - 9675525
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctc 130  Q
    |||||||||||  ||||   ||| |||||||| | |||||||||||||||||||||  ||||||||| |||||||| || |||||||    
T  9675611 ttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 9675525  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 9692633 - 9692547
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctc 130  Q
    |||||||||||  ||||  ||||  ||||||||| ||||||| |||||||||||||  ||||||||| |||||||| || |||||||    
T  9692633 ttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactctc 9692547  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 21464105 - 21464019
Alignment:
Q  44 ttgggcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctc 130  Q
    |||||||||||  |||| |||||||||| ||| | || ||| |||||||||||||||| |||| ||| |||||||| || |||||||    
T  21464105 ttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactctc 21464019  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 35155838 - 35155887
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttg 311  Q
    |||||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  35155838 tagactttatagctgatcaccctttcttatttttaattagagaagatttg 35155887  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 15556438 - 15556510
Alignment:
Q  262 tagactttgtagctgaccaccctttcttgttttttattagagaagatttgtctgctacaatactctttgttgg 334  Q
    |||||||||||||||||||||| ||||| ||| | || |||||||||||| | |  ||||| |||||||||||    
T  15556438 tagactttgtagctgaccacccattcttatttctaataagagaagatttgaccggcacaatcctctttgttgg 15556510  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 35162669 - 35162732
Alignment:
Q  65 tgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactc 128  Q
    ||||||||||  | |||||||||||||||||||||  ||||||||| |||||||| || |||||    
T  35162669 tgctgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactc 35162732  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 35155632 - 35155714
Alignment:
Q  48 gcttgaactttctaatatgctgaaggagttgggagtgattttacctttctctgatggaggtttaacaaaaatagtagactctc 130  Q
    |||||||  |||| |||||||||| ||  | |||||||||||||||||||||  ||| ||||| |||||||| || |||||||    
T  35155632 gcttgaatcttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatggtggactctc 35155714  T

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