View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_38 (Length: 412)
Name: NF15302_high_38
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 45704419 - 45704028
Alignment:
| Q |
1 |
aaaaatttagtagggagcaaagagtcaaagtataagggttatgaaaatgcgagtgcattagtggtaactagttcgaaaactgaagtaagttgggtcatgg |
100 |
Q |
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| T |
45704419 |
aaaaatttagtagggagcaaagagtcaaagtataatggttatgagaatgcgagtgcattagtggtaactagttcgaaaactgaagtaagttgggtcatgg |
45704320 |
T |
|
| Q |
101 |
agaatagatgctcttatcacatgtatcgaaggaataaataactcgagactttagagttgaaataatgtgaaatttttcgcatgagaaataataaaacttg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45704319 |
agaatagatgctcttatcacatgtatccaaggaatgaataaccggagactttagagctgaaataatgtgaaatttttcgcatgagaaataataaaacttg |
45704220 |
T |
|
| Q |
201 |
taaggttgaaggtatcagtctgcaagttcctattatatacaatgtgaactatgttgaaaaatttaagcgaaattcgttatccataaagatgttcgtttga |
300 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45704219 |
taaggttgaaggtatcagtctacaagttcctat--tatacaatgtgaactatgttgaaaaacttaagcgaaattcgttatccataaagatgttcgtttga |
45704122 |
T |
|
| Q |
301 |
ttaggctattaccctagtattaagagcatgacatggtgaaaatttcacatggtgcattgacaatttctaaaaataccaaaatgtatggtttata |
394 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45704121 |
ttaggctattacgctagtattaagagcatgacatggtgaaaatttcacatggtgcattgacaatttctaaaaataccaaaatgtttggtttata |
45704028 |
T |
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