View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_41 (Length: 378)
Name: NF15302_high_41
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 42767666 - 42767327
Alignment:
| Q |
12 |
gtgagaagaaagagtttagagtgactttcagtttgaagactctaactaataatagtactgattatttatttgggagtttggattggtccgattgcaagca |
111 |
Q |
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| T |
42767666 |
gtgaaaagaaagagtttagagtgactttcagtttgaagactctaactaataatagtactgattatttatttgggagtttggattggtccgattgcaagca |
42767567 |
T |
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| Q |
112 |
tcatgtcaggagttctattgtaattaagctacaaaactgaggtttccttcttattttcctggcagtaaataaacaattttttgagatgtgcaagctcttt |
211 |
Q |
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| T |
42767566 |
tcatgtcaggagttctattgtaattaagctacaaaactgaggtttccttcttattttcctggcagt-------------tttgagatgtgcaagctcttt |
42767480 |
T |
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| Q |
212 |
gaaactt-ataaattgatgattaaatcaatatcaatataaatgttcgttcggcttacatgtttgtggttgaaatactcttgtaaatgcatcatactgcct |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42767479 |
gaaacttgataaattgatgattaaatcaatatcaatataaatgttcgttcggcttacatgtttgtggttgaaatactcttgtaaatgcatcatactgcct |
42767380 |
T |
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| Q |
311 |
attcaaatgggaaaaagaaaaatgaaattttagattatatttgggttgattat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42767379 |
attcaaatgggaaaaagaaaaatgaaattttagattatatttgggttgattat |
42767327 |
T |
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