View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_49 (Length: 355)
Name: NF15302_high_49
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 343550 - 343198
Alignment:
| Q |
1 |
aaaagcaataaatgttatctacaaagtatgaaataggttagtaaaataaagaagaaaagatgatacaagaaatatttactaacttttaagaagaggggtt |
100 |
Q |
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| T |
343550 |
aaaagcaataaatgttatctacaaaatatgaaataggttagtaaaataaagaagaaaagatgatacaagaaatatttcctaacttttaagaagaggggct |
343451 |
T |
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| Q |
101 |
tatacaagtctcctaacaaaattgtttatggattttaaataaggtaattataaataaaagaaa---attttatatgtctattttcaatgtataaaacac- |
196 |
Q |
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| T |
343450 |
tatacaagtgtcctaagaaaattgtttatggattttaaataaggtaattataaataaaagaaagtcgttttatatgtttattttcaatgtataaaacaca |
343351 |
T |
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| Q |
197 |
-aattttctatnnnnnnnntttacgcaagttaaagaatactttgaagacactggttatcatttgtgatgcatatttcaaatttaaagatgatatatgtat |
295 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
343350 |
aaattttctataaaaaaattttacgcaagttaaagaatagtttcaagacactgg-------ttgtgatgcatatttcaaatttaaagatgatatatgtat |
343258 |
T |
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| Q |
296 |
gcaagagcgcggtgttctatcccctagtggaaaggttgtgcaaatataaaataatcaatc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
343257 |
gcaagagcgcggtgttctatcccctagtggaaaggttgtgcaaatatacaataatcaatc |
343198 |
T |
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