View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_52 (Length: 339)

Name: NF15302_high_52
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_52
NF15302_high_52
[»] chr7 (2 HSPs)
chr7 (16-333)||(22763929-22764237)
chr7 (17-221)||(28156337-28156546)
[»] chr8 (3 HSPs)
chr8 (20-255)||(30391657-30391903)
chr8 (16-253)||(41535009-41535236)
chr8 (256-300)||(15151949-15151993)
[»] chr2 (2 HSPs)
chr2 (16-255)||(8919043-8919291)
chr2 (20-257)||(24772566-24772812)
[»] chr1 (4 HSPs)
chr1 (16-256)||(27341254-27341504)
chr1 (47-256)||(29860418-29860637)
chr1 (151-255)||(28191225-28191329)
chr1 (24-65)||(8702742-8702783)
[»] chr4 (6 HSPs)
chr4 (16-256)||(13240822-13241070)
chr4 (20-210)||(56564035-56564204)
chr4 (16-87)||(53003157-53003228)
chr4 (16-91)||(34973661-34973737)
chr4 (112-255)||(20402378-20402521)
chr4 (20-65)||(20402302-20402347)
[»] chr5 (6 HSPs)
chr5 (117-255)||(16462463-16462600)
chr5 (119-255)||(17272532-17272668)
chr5 (20-106)||(40686181-40686267)
chr5 (16-72)||(16461847-16461903)
chr5 (19-82)||(17272456-17272519)
chr5 (120-225)||(40691957-40692062)
[»] chr6 (2 HSPs)
chr6 (16-252)||(28147889-28148132)
chr6 (16-256)||(11451231-11451470)
[»] chr3 (6 HSPs)
chr3 (16-107)||(34604350-34604442)
chr3 (130-255)||(3800482-3800607)
chr3 (130-255)||(47340917-47341042)
chr3 (19-65)||(3800682-3800728)
chr3 (20-81)||(36329877-36329939)
chr3 (19-65)||(47340796-47340842)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 22764237 - 22763929
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgaccaccca 115  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |||||    
T  22764237 attcaatattaaataataaaataattcagtcttacctaataaaactatttataaactatttatttttttaaaagggccagcccgcaagcccgacgaccca 22764138  T
Q  116 tcccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagggccga 215  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||        |    
T  22764137 tcccatctaaaatgcaggcccgatgggctggccca-aaaagttagggttgttttttcatgccttttttacggtccggaccacactaaaata--------a 22764047  T
Q  216 agggccagcctgatggacctgacccattttgacagctctacatattagcactcaaaaatcacaatattttacctagtttacgagtaactttctaattctc 315  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22764046 agggccagtccgatggacctgacccattttgacaactctacatattagcactcaaaaatcacaatattttacctagtttacgattaactttctaattctc 22763947  T
Q  316 atcctctatgtctaatct 333  Q
    ||||||||||||||||||    
T  22763946 atcctctatgtctaatct 22763929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 28156337 - 28156546
Alignment:
Q  17 ttcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgaccacccat 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||     || ||||| ||||||||||||| |  ||||     
T  28156337 ttcaatattacataataaaataattcagtcttacctaataaaactatttatacactattttttt-----aatgggccggcctgcaagcccggcggcccag 28156431  T
Q  117 ccca----------tctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgtt-ttttcatgccttttttacggcccggcccacactaaaat 205  Q
    ||||          ||||||||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||     
T  28156432 cccaggccggcccatctaaaatgcaggcccgatgggctggcccaaaaa-gatagggtcgttgttttcatgccttttttacggcccggcccacactaaaac 28156530  T
Q  206 aaagggccgaagggcc 221  Q
    | |||||||| |||||    
T  28156531 agagggccgatgggcc 28156546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 30391657 - 30391903
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaactatttataaactctttattt-tttaaaaagggccagcctgcaagcccgac----ca-cc 113  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||| ||| |||||||||||    || ||    
T  30391657 aatattacataataaaataattcagtcttacctagtaaaactatttataaactatttatttattttaaaagggccggcccgcaagcccgacggcgcagcc 30391756  T
Q  114 cat-----cccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaa 208  Q
    ||      ||||||||||||||||||| ||||| |||||||||||| | |||| | ||||||||||||||||||||||||||| ||||||| ||||||||    
T  30391757 caggtcgacccatctaaaatgcaggcctgatgggctggcccaaaaatgataggattgttttttcatgccttttttacggcccgacccacacaaaaataaa 30391856  T
Q  209 gggccgaagggccagcctgatggacctgacccattttgacagctcta 255  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  30391857 gggccgaagggccagcccggtgggcctgatccattttgacagctcta 30391903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 41535009 - 41535236
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagccc-gaccaccc 114  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||||||           ||||| ||||||||| ||| |||||||| | |||  |    
T  41535009 attcaatattacataataaaataattcaatcttacctaatcaaactatttat-----------ttttttaaaagggccggcccgcaagcccagcccaggc 41535097  T
Q  115 at-cccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagggcc 213  Q
       |||||||||||||||||||||||||||||||||||||| | |||| || | |||| ||||||||||| |||||| ||||||||||||||| ||||||    
T  41535098 tgacccatctaaaatgcaggcccgatggactggcccaaaaa-gataggttcatatttttatgccttttttccggcccagcccacactaaaatagagggcc 41535196  T
Q  214 gaagggccagcctgatggacctgacccattttgacagctc 253  Q
    |||||||||||| | ||| |||||||||||||| ||||||    
T  41535197 gaagggccagcccggtgggcctgacccattttgccagctc 41535236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 15151993 - 15151949
Alignment:
Q  256 catattagcactcaaaaatcacaatattttacctagtttacgagt 300  Q
    ||||||| ||||||||| |||||||||||||||||||||| ||||    
T  15151993 catattaacactcaaaagtcacaatattttacctagtttatgagt 15151949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 8919291 - 8919043
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgac----ca 111  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||| |||||  || ||||||||| |    ||    
T  8919291 attcaatattacataataaaataattcagtcttgcctaacaaaactatttataaactatttattttttaaaaggggccgtcccgcaagcccggcgggcca 8919192  T
Q  112 -cccat-----cccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaat 205  Q
     ||||      |||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||| |||||||||||  ||||||||||||    
T  8919191 gcccaggccggcccatctaaaatgcaggcccgatggactggcccaaaaa-gatagggttgtttttttatgccttatttacggcccgatccacactaaaat 8919093  T
Q  206 aaagggccgaagggccagcctgatggacctgacccattttgacagctcta 255  Q
    ||||||| |||||||||| | | |||| |||||||||||||| |||||||    
T  8919092 aaagggctgaagggccagtccggtggatctgacccattttgatagctcta 8919043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 24772566 - 24772812
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaactattt-ataaactctttattttttaaaaagggccagcctgcaagcccgaccacccatcc 118  Q
    |||||||||||||||||||||| | || |||||||||||||||||| ||||||| |||||||||| ||  ||||| ||| ||||||||  |  |||| ||    
T  24772566 aatattacataataaaataattcaatcatacctaataaaactattttataaactatttatttttttaat-gggccggcccgcaagccctgcgtcccagcc 24772664  T
Q  119 cat----------ctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgtttttt-catgccttttttacggcccggcccacactaaaataa 207  Q
    ||           |||||||| | ||| ||||| |||||||||||| |  ||||||||||||| ||| | |||||||||||||| ||||||||||||||     
T  24772665 caggccggcccacctaaaatgaaagcctgatgggctggcccaaaaa-gacagggtcgtttttttcattctttttttacggcccgacccacactaaaatag 24772763  T
Q  208 agggccgaagggccagcctgatggacctgacccattttgacagctctaca 257  Q
    ||||| | ||||||| ||   |||||||| ||||||||||||||| ||||    
T  24772764 agggctg-agggccaacccagtggacctggcccattttgacagctgtaca 24772812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 27341254 - 27341504
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagccc----gacca 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| | ||| ||||||||    | |||    
T  27341254 attcaatattacataataaaataattcagtcttacctaataaaactatttataaactatttatttttttaaaagggtcggcccgcaagcccagcggccca 27341353  T
Q  112 cc------catcccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttc-atgccttttttacggcccggcccacactaaaa 204  Q
    ||      |  || |||||||| |||||||  |||| ||||||| |||||| |||| | |||||||| ||||||||| ||||| ||  ||||||||||||    
T  27341354 cctcaggtcgaccgatctaaaacgcaggcctcatgggctggccc-aaaaagataggtttgttttttcaatgccttttatacggaccttcccacactaaaa 27341452  T
Q  205 taaagggccgaagggccagcctgatggacctgacccattttgacagctctac 256  Q
    || ||||||||| || |||| ||||| |||||||||||||||||||||||||    
T  27341453 tagagggccgaaaggtcagcttgatgaacctgacccattttgacagctctac 27341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 29860418 - 29860637
Alignment:
Q  47 ttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgaccacccatccca----------tctaaaatgcaggccc 136  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| | |||   |||||||||  |||| ||||          ||||||||||||||      
T  29860418 ttacataataaaactatttataaactatttatttttttaaaagggtcggcccataagcccgacggcccagcccaggccggcccatctaaaatgcaggctt 29860517  T
Q  137 gatggactggcccaaaaaagttagggtcgtttttt-catgccttttttacggcccggcccacactaaaataaagggccgaagggccagcctgatggacct 235  Q
    ||||| |||||||||||| | |||||||||||||| ||| ||||||  ||||||| ||||||| |||||||||||||| ||||||||||||| ||| |||    
T  29860518 gatgggctggcccaaaaa-gatagggtcgtttttttcataccttttaaacggcccagcccacagtaaaataaagggccaaagggccagcctggtgggcct 29860616  T
Q  236 gacccattttgacagctctac 256  Q
    | |||||||||||||||||||    
T  29860617 ggcccattttgacagctctac 29860637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 28191225 - 28191329
Alignment:
Q  151 aaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagggccgaagggccagcctgatggacctgacccattttgacag 250  Q
    ||||||||||||| |||||||| ||||||||| ||||||  | |||||| ||||||||||| | | ||||||||||| | ||||| ||||||||| ||||    
T  28191225 aaaaagttagggttgttttttcttgcctttttaacggcctagtccacacaaaaataaagggtcaatgggccagcctggtagacctaacccattttaacag 28191324  T
Q  251 ctcta 255  Q
    |||||    
T  28191325 ctcta 28191329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 8702783 - 8702742
Alignment:
Q  24 ttacataataaaataatttagtcttacctaataaaactattt 65  Q
    ||||||||||||||| || |||||||| ||||||||||||||    
T  8702783 ttacataataaaatacttcagtcttacataataaaactattt 8702742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 13241070 - 13240822
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgaccaccca 115  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||  ||||||| |  || ||||| ||  |  ||||    
T  13241070 attcaatattacataataaaataatccagtcttacctaataaaactatttataaactattttttttt--aaaagggtcgacccgcaagtccagcggccca 13240973  T
Q  116 tccca----------tctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttca-tgccttttttacggcccggcccacactaaaa 204  Q
     | ||          ||||||||||||||| ||||| |||||||||||| | |||| | ||||||||| |||||||||||||| ||| ||||||||||||    
T  13240972 cctcaggtcgaccggtctaaaatgcaggcctgatgggctggcccaaaaa-gataggtttgttttttcaatgccttttttacggaccgacccacactaaaa 13240874  T
Q  205 taaagggccgaagggccagcctgatggacctgacccattttgacagctctac 256  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||||||||||    
T  13240873 taaagggccgaaaggccagcttgatgagcctgacccattttgacagctctac 13240822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 56564204 - 56564035
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaactatttataaactctttatttttt-aaaaagggccagcctgcaagcccgaccacccatcc 118  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||||||             ||||            
T  56564204 aatattacataataaaataattcaatcttacctaataaaactatttataaactatttatttttttaaaaagggcc-------------gacc-------- 56564126  T
Q  119 catctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagg 210  Q
    ||||||||||||||||||||||  |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  56564125 catctaaaatgcaggcccgatgagctggcccaaaaa-gatagggtcgttttttcatggcttttttacggcccggcccacactaaaataaagg 56564035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 53003228 - 53003157
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaa 87  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  53003228 attcaatattacataataaaataattcagtcttacctaataaaactatttataaactatttattttttaaaa 53003157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 34973737 - 34973661
Alignment:
Q  16 attcaatattacataataaaataatttagtctt-acctaataaaactatttataaactctttattttttaaaaaggg 91  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  34973737 attcaatattacataataaaataattcagtctttacctaataaaactatttataaactatttatttttttaaaaggg 34973661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 20402378 - 20402521
Alignment:
Q  112 cccatcccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgtttttt-catgccttttttacggcccggcccacactaaaataaagg 210  Q
    |||| ||||| |||||||||||||||||||  | ||||||||| |  | ||||||||||| | ||| |||||||||| || |||||||||||| || |||    
T  20402378 cccagcccatgtaaaatgcaggcccgatgggttagcccaaaaa-gacaaggtcgtttttttcgtgctttttttacggtccagcccacactaaagtagagg 20402476  T
Q  211 gccgaagggccagcctgatggacctgacccattttgacagctcta 255  Q
    || |||||| | | ||  |||  |||||||||||||||| |||||    
T  20402477 gctgaagggtcggtctagtgggtctgacccattttgacaactcta 20402521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 20402302 - 20402347
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaactattt 65  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||    
T  20402302 aatattacataataaaataattcagtcttacctgataacactattt 20402347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 16462463 - 16462600
Alignment:
Q  117 cccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagggccgaa 216  Q
    ||||||||||||| ||||||||||| |||| ||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||| ||  |||||    
T  16462463 cccatctaaaatgtaggcccgatgggctggtccaaaaa-gatagggtcgttttttcatgtcttttttacggcccgacccacactaaaatagagatccgaa 16462561  T
Q  217 gggccagcctgatggacctgacccattttgacagctcta 255  Q
    |||||||  |||||| ||||| ||||||||||| |||||    
T  16462562 gggccagtatgatgggcctgatccattttgacaactcta 16462600  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 17272532 - 17272668
Alignment:
Q  119 catctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgtttt-ttcatgccttttttacggcccggcccacactaaaataaagggccgaag 217  Q
    ||||||||||||||| |||||||  ||||||||||| | |||||||||||| |||||||  ||||||||||||| |||||| ||||||| ||||||||||    
T  17272532 catctaaaatgcaggtccgatgggttggcccaaaaa-gatagggtcgtttttttcatgcagtttttacggcccgacccacaataaaatagagggccgaag 17272630  T
Q  218 ggccagcctgatggacctgacccattttgacagctcta 255  Q
    |||||    | ||| ||||| |||||||||||||||||    
T  17272631 ggccaattcggtgggcctgatccattttgacagctcta 17272668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 40686181 - 40686267
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagccc 106  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||| || ||||||||| |||  |||||||    
T  40686181 aatattacataataaaataattcagtcttccctaataaaagtatttataaactatttatttgtttaaaagggccggcccacaagccc 40686267  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 16461847 - 16461903
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaact 72  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  16461847 attcaatattacataataaaataattcactcttacttaataaaactatttataaact 16461903  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 17272456 - 17272519
Alignment:
Q  19 caatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttt 82  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||    
T  17272456 caatattacgtaataaaataattcagtcttacctaataaaactatttatacactattttttttt 17272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 40691957 - 40692062
Alignment:
Q  120 atctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgcctttt--ttacggcccggcccacactaaaataaagggccgaag 217  Q
    |||||||||||||| ||||||   ||||||||||| | ||||||||||||| ||||| ||||  |||||||| | |||||||| |||||  || ||||||    
T  40691957 atctaaaatgcaggaccgatgtgatggcccaaaaa-gatagggtcgttttt-catgctttttttttacggcctgacccacacttaaataggggaccgaag 40692054  T
Q  218 ggccagcc 225  Q
    ||||||||    
T  40692055 ggccagcc 40692062  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 28147889 - 28148132
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttattttttaaaaagggccagcctgcaagcccgaccaccca 115  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| | | |||||| ||  ||| | ||| ||||||||| |  ||||    
T  28147889 attcaatattacataataaaataattttgtcttacctaacaaaactatatataaactatctttttttttaa--gggtcggcc-gcaagcccggcggccca 28147985  T
Q  116 t----------cccatctaaaatgcagg-cccgatggactggcccaaaaaagttagggtcgtttttt-catgccttttttacggcccggcccacactaaa 203  Q
               ||||||||||||||| | ||||| || |||||||||||| | |||||||||||||| | |||||||||||||| || ||||||||||||    
T  28147986 gtccaggccagcccatctaaaatgcaagtcccgaggg-ctggcccaaaaa-gatagggtcgtttttttcgtgccttttttacggtccagcccacactaaa 28148083  T
Q  204 ataaagggccgaagggccagcctgatggacctgacccattttgacagct 252  Q
    ||| ||| || ||||||||||| ||||| ||||||||||||||||||||    
T  28148084 atagaggaccaaagggccagcccgatgggcctgacccattttgacagct 28148132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 11451470 - 11451231
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaacta-tttataaactctttattttttaaaaagggccagcctgcaagcccgaccaccc 114  Q
    |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| |  ||||||| ||||||||| |||  |||||| | | ||||    
T  11451470 attcaatattacataataaaataatccagtcttacctaataaaactattttataaactatagatttttt-aaaagggccggcccacaagcctggcaaccc 11451372  T
Q  115 atcccatctaaaatgcaggcccgatggactggcccaaaaaagttagggtcgttttttcatgccttttttacggcccggcccacactaaaataaagggccg 214  Q
    |  ||||||||||| |||||||||||| ||| |||  |||||  | | | | |||||||||| ||| |||||| ||| |||| ||||||||| | |||||    
T  11451371 agtccatctaaaatacaggcccgatgggctgaccc-taaaagacaagattgatttttcatgcttttcttacggtccgacccatactaaaatagacggccg 11451273  T
Q  215 aagggccagcctgatggacctgacccattttgacagctctac 256  Q
    |||||||| |||| ||  | || || ||||||||| ||||||    
T  11451272 aagggccatcctggtgagcttggccaattttgacatctctac 11451231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 34604442 - 34604350
Alignment:
Q  16 attcaatattacataataaaataatttagtcttacctaataaaactatttataaactctttatttttta-aaaagggccagcctgcaagcccg 107  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||    
T  34604442 attcaatatgacataataaaataattcagtcttacctaataaaactatttataaactatttattttttataaaagggccggcccgcaagcccg 34604350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 3800607 - 3800482
Alignment:
Q  130 caggcccgatggactggcccaaaaaagttagggtcgtt-ttttcatgccttttttacggcccggcccacactaaaataaagggccgaagggccagcctga 228  Q
    |||||||||||| |||||||||||| |  ||||||||| ||||||| | |||||||||||||| |||||||||||||| ||||||  ||||||  ||||     
T  3800607 caggcccgatgggctggcccaaaaaggc-agggtcgttcttttcatactttttttacggcccgacccacactaaaatagagggccagagggccgacctgg 3800509  T
Q  229 tggacctgacccattttgacagctcta 255  Q
    ||| ||||  ||||||||||| |||||    
T  3800508 tgggcctgtgccattttgacaactcta 3800482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 47340917 - 47341042
Alignment:
Q  130 caggcccgatggactggcccaaaaaagttagggtcgtt-ttttcatgccttttttacggcccggcccacactaaaataaagggccgaagggccagcctga 228  Q
    ||||| ||||||  ||||||||||| |  ||||||||| ||||||| | |||||||||||||| |||||||||||||| ||||||  |||||||||| |     
T  47340917 caggctcgatgggttggcccaaaaaggc-agggtcgttcttttcatactttttttacggcccgacccacactaaaatagagggccagagggccagcccgg 47341015  T
Q  229 tggacctgacccattttgacagctcta 255  Q
    ||| ||||  |||||||||||||||||    
T  47341016 tgggcctgtgccattttgacagctcta 47341042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3800728 - 3800682
Alignment:
Q  19 caatattacataataaaataatttagtcttacctaataaaactattt 65  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3800728 caatattacataataaaataattcagtcttacttaataaaactattt 3800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 36329939 - 36329877
Alignment:
Q  20 aatattacataataaaataatttagtcttacctaataaaacta-tttataaactctttatttt 81  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||    
T  36329939 aatattgcataataaaataattcagtcttacctaataaaactattttataaactatttttttt 36329877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 47340796 - 47340842
Alignment:
Q  19 caatattacataataaaataatttagtcttacctaataaaactattt 65  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  47340796 caatattacataataaaataattcagtgttacttaataaaactattt 47340842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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