View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_53 (Length: 338)
Name: NF15302_high_53
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 6897549 - 6897678
Alignment:
| Q |
201 |
gaacataccaatttttacatgcacctacaaaaggaacaaataagactaaatcacatatgaggaagatgtttcatttacatgccaaaaatcattaataaaa |
300 |
Q |
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| T |
6897549 |
gaacataccaatttttacatgcacctacaaaaggaacaagtaagactaaatcacatatgaggaagatgtttcatttacatgccaaaaatcattaataaaa |
6897648 |
T |
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| Q |
301 |
aacctcttatttaagattttcagaataata |
330 |
Q |
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| T |
6897649 |
aacctcttatttaagattttcagaataata |
6897678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 6897404 - 6897481
Alignment:
| Q |
56 |
caatgaatttggaaaccagaacttaggtttaaagatttttcaatcaagagcaactatttctcacagttattaatagta |
133 |
Q |
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| T |
6897404 |
caatgaatttggaaaccagaacttaggtttaaagatttttcaaccaagagcaactatttctcacagttattaatagta |
6897481 |
T |
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