View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_55 (Length: 325)
Name: NF15302_high_55
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 41721688 - 41721380
Alignment:
| Q |
17 |
actttagaggtaattaaagcttcgtttgaatctcacttgaacatatacgataccatgttgtaattttagacttgacgatggaannnnnnngggattcaat |
116 |
Q |
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| T |
41721688 |
actttagaggtaattaaagcttcgtttgaatctcacttgaacatatacgataccatgttgtagttttagacttgacgatggaatttttttgggattcaat |
41721589 |
T |
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| Q |
117 |
ggacaatatgtattttacaatgtacttctctcgctttaaatgatttgaatggtatttttataagatgacatagctaaagataaatgaaaaaagtggttat |
216 |
Q |
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| T |
41721588 |
ggacaatatttattttacaatgtacttctctcgctttaaatgatttgaatggtatttttataagatgacatagctaaagataaatgaaaaaagtggttat |
41721489 |
T |
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| Q |
217 |
ggacagtttttgttttgttttgacaacgagtactgggtggagcattgagttgtatatgtcaaaagaagaaattgatattctattattttgccagttacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41721488 |
ggacagtttttgttttgttttgacaacgagtactgggtggagcattgagttgtatatgtcaaaagaagaaattgatattctattattttgccagttacta |
41721389 |
T |
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| Q |
317 |
ttatgaaat |
325 |
Q |
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| T |
41721388 |
ttatgaaat |
41721380 |
T |
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