View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_71 (Length: 265)
Name: NF15302_high_71
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 14333654 - 14333390
Alignment:
| Q |
1 |
atttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaagaactaaaccgga |
100 |
Q |
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| T |
14333654 |
atttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaagaactaaaccgga |
14333555 |
T |
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| Q |
101 |
ctgtggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaaaaactgctgctagaagaatcgaacggaga |
200 |
Q |
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| T |
14333554 |
ctgtggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaaaaactgctgctagaagaatcgaacggaga |
14333455 |
T |
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| Q |
201 |
acgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacatgaaaat |
265 |
Q |
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| T |
14333454 |
acgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacatgaaaat |
14333390 |
T |
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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 53088949 - 53088774
Alignment:
| Q |
4 |
tagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaagaactaaaccggactg |
103 |
Q |
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| T |
53088949 |
tagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtggatgttccatgcattgtttaaaaaactagaccggaccg |
53088850 |
T |
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| Q |
104 |
---------tggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaa |
171 |
Q |
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| T |
53088849 |
ggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaacc-ggcggatcaatacatggaccaggctaa |
53088774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 53088748 - 53088657
Alignment:
| Q |
172 |
aaactgctgctagaagaatcgaac---ggagaacgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacatg |
260 |
Q |
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| T |
53088748 |
aaactgctgctagcagaatccaactggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttgatcgaataaaataaacatg |
53088657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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