View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_high_77 (Length: 252)

Name: NF15302_high_77
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_high_77
NF15302_high_77
[»] chr7 (3 HSPs)
chr7 (18-234)||(5568509-5568726)
chr7 (15-234)||(3615047-3615278)
chr7 (33-234)||(35611299-35611498)
[»] chr4 (3 HSPs)
chr4 (18-234)||(9981289-9981506)
chr4 (29-233)||(20855476-20855673)
chr4 (71-219)||(46355891-46356035)
[»] scaffold1903 (1 HSPs)
scaffold1903 (18-234)||(383-610)
[»] chr8 (1 HSPs)
chr8 (29-233)||(14735280-14735479)
[»] chr3 (2 HSPs)
chr3 (68-234)||(33130272-33130445)
chr3 (29-234)||(54670767-54670962)
[»] chr2 (1 HSPs)
chr2 (68-192)||(15480331-15480455)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 5568509 - 5568726
Alignment:
Q  18 aggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatga 117  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5568509 aggtcacaacaatacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatga 5568608  T
Q  118 aatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatcaa-atttttatctggtttttcatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||     
T  5568609 aatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttatctagtttttcata 5568708  T
Q  217 aagtaaatgccatgaaag 234  Q
    ||||||||||||||||||    
T  5568709 aagtaaatgccatgaaag 5568726  T

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Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 3615278 - 3615047
Alignment:
Q  15 cataggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcctt-----------tgtgtttcttcctctaatctcctcttgaaacaaat 103  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||| |||||||||||||||||||    
T  3615278 cataggtcacaacaatacaaacaaaattttcagaagcattcaactcaattccttctcaaatcctttgtgtttcttcctctgatctcctcttgaaacaaat 3615179  T
Q  104 aggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatcaa-attttta 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  3615178 aggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacattttta 3615079  T
Q  203 tctggtttttcatgaagtaaatgccatgaaag 234  Q
    ||||||||||||||||||||||||||||||||    
T  3615078 tctggtttttcatgaagtaaatgccatgaaag 3615047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 35611299 - 35611498
Alignment:
Q  33 aaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaac 132  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||    
T  35611299 aaacaaaattttcggaagcaatcaattcaattcctttgtgtttcttcctctaatctcctcatgaaacaaataagtttacccatgaaatcaattgtttaac 35611398  T
Q  133 cttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatcaa-atttttatctggtttttcatgaagtaaatgccatga 231  Q
       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  35611399 ---cttcttcaccatcaccatcaacaacttcatcctgttcttgttttatgagattaacatgaacatttttatctggtttttcatgaagtaaatgccatga 35611495  T

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Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 9981289 - 9981506
Alignment:
Q  18 aggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatga 117  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981289 aggtcacaacaatacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatga 9981388  T
Q  118 aatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatcaa-atttttatctggtttttcatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| || |||||||||    
T  9981389 aatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcctgttcttattttatgagattaacatgaacatttttatgtgatttttcatg 9981488  T
Q  217 aagtaaatgccatgaaag 234  Q
    ||||||||||||||||||    
T  9981489 aagtaaatgccatgaaag 9981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 20855673 - 20855476
Alignment:
Q  29 atacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtt 128  Q
    ||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  20855673 atacaaacaaaattttcagaaacaatcaattcaattcct--gtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacacatgaaatcaattgtt 20855576  T
Q  129 taaccttcttcttcaccatcaccatcaacaac-ttcatcttgttcttgttttatgagattaacatca-aatttttatctggtttttcatgaagtaaatgc 226  Q
    ||||| |||||||||||      ||||||||| || ||||| || |||||||||||||||||||| |  ||||||||||| ||||| |||||| ||| ||    
T  20855575 taaccatcttcttcacc------atcaacaactttaatcttatttttgttttatgagattaacatgattatttttatctgatttttaatgaag-aaacgc 20855483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 46356035 - 46355891
Alignment:
Q  71 tgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaac-ttcatcttg 169  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||      ||||||||| || |||||     
T  46356035 tgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccataaaatcaattgtttaaccatcttcttcacc------atcaacaactttaatctta 46355942  T
Q  170 ttcttgttttatgagattaacatca-aatttttatctggtttttcatgaag 219  Q
    ||||||||||| ||||||||||| |  ||||||||||| ||||| ||||||    
T  46355941 ttcttgttttacgagattaacatgattatttttatctgatttttaatgaag 46355891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 383 - 610
Alignment:
Q  18 aggtcacagtaatacaaacaaaattttcagaagcattcaattcaa-----------ttcctttgtgtttcttcctctaatctcctcttgaaacaaatagg 106  Q
    ||||||||  |||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||| |    
T  383 aggtcacaacaatacaaacaaaattttcagaagcattcaattcaattccttctcaattcctttgtgtttcttcctctaatctcctcttgaaacaaatatg 482  T
Q  107 cctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatcaa-atttttatct 205  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  483 cctacccatgaaatcaattgtttaatcttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatgaacatttttat-t 581  T
Q  206 ggtttttcatgaagtaaatgccatgaaag 234  Q
    |||||||||||||||||||||||||||||    
T  582 ggtttttcatgaagtaaatgccatgaaag 610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 14735479 - 14735280
Alignment:
Q  29 atacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtt 128  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  14735479 atacaaacaaaattttcagaaacaataaattcaattcctttgtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccatgaaatcaattgtt 14735380  T
Q  129 taaccttcttcttcaccatcaccatcaacaac-ttcatcttgttcttgttttatgagattaacatcaa-atttttatctggtttttcatgaagtaaatgc 226  Q
    ||||| ||||||      ||| |||||||||| || ||||| |||| |||||||||||||||||| || ||||||||||| ||||| |||||| ||| ||    
T  14735379 taaccatcttct------tcatcatcaacaactttaatcttattctggttttatgagattaacatgaatatttttatctgatttttaatgaag-aaacgc 14735287  T

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Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 33130445 - 33130272
Alignment:
Q  68 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 167  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  33130445 ttgtgtttcttcctctaatctcctcttgaaacaaataggtctacccataaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 33130346  T
Q  168 t------gttcttgttttatgagattaacatcaa-atttttatctggtttttcatgaagtaaatgccatgaaag 234  Q
    |      |||||||||| |||||||||| || || ||| || ||||||||||||||||||||| |||| |||||    
T  33130345 tgttcctgttcttgtttgatgagattaagatgaacattgttgtctggtttttcatgaagtaaacgccaggaaag 33130272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 54670767 - 54670962
Alignment:
Q  29 atacaaacaaaattttcagaagcattcaattcaattcctttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtt 128  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  54670767 atacaaacaaaattttcagaaacaatcaattcaattcctttgtgtttcttcctctaatctcctcgtgaaacaaaaagccctacccatgaaatcaattgtt 54670866  T
Q  129 taaccttcttcttcaccatcaccatcaacaacttcatcttgttcttgttttatgagattaacatca-aatttttatctggtttttcatgaagtaaatgcc 227  Q
    |||| ||||         |||| ||||||   || | ||| ||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||  ||    
T  54670867 taactttct---------tcacaatcaac--tttaaacttattcttgttttatgagattaacatgactatttttatctggtttttaatgaagtaaacacc 54670955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 15480331 - 15480455
Alignment:
Q  68 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 167  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  15480331 ttgtgtttcttcctccaatctcctcttgaaacaaataggtctacccaagaaatcaattgtttcaccttcctcttcaccatcaccatcaacaacttcatct 15480430  T
Q  168 tgttcttgttttatgagattaacat 192  Q
    ||||||||||||| || ||||||||    
T  15480431 tgttcttgttttaagatattaacat 15480455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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