View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_78 (Length: 250)
Name: NF15302_high_78
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_78 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 4915406 - 4915615
Alignment:
| Q |
15 |
cagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtggatacagacctccttcgaagtcattcttaattggttcatggttgga |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915406 |
cagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtggatacagacctccttcgaagtcattcttaattggttcatggttgga |
4915505 |
T |
|
| Q |
115 |
aaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaaca |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915506 |
aaaacttctgcaaagtggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaaca |
4915605 |
T |
|
| Q |
215 |
gttggagtga |
224 |
Q |
| |
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|||||||||| |
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| T |
4915606 |
gttggagtga |
4915615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 3011340 - 3011552
Alignment:
| Q |
15 |
cagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgtg---gatacagacctccttcgaagtcattcttaattggttcatggtt |
111 |
Q |
| |
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|||||| ||||||| || || |||||| ||||| ||||||||||||||| || |||||| |||||||| ||||||||||||||||| | || || |
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| T |
3011340 |
cagagaagttcttggaatgcttaaaaggaggcaactggcttaaagttacaggtaatagatacatgcctccttcaaagtcattcttaattggcttatcatt |
3011439 |
T |
|
| Q |
112 |
ggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaa |
211 |
Q |
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|| ||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3011440 |
gggaaaacttttgcaaagtggtttagtacttgttgacattcccctgattgatgagagcttctatggggatagaataaatgaatacaaagaggagttgaaa |
3011539 |
T |
|
| Q |
212 |
acagttggagtga |
224 |
Q |
| |
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||| ||||||||| |
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| T |
3011540 |
acaattggagtga |
3011552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 2922014 - 2921867
Alignment:
| Q |
77 |
cctccttcgaagtcattcttaattggttcatggttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatg |
176 |
Q |
| |
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|||||||| ||||||||||||||| | | | |||| ||| || ||||||| |||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
2922014 |
cctccttcaaagtcattcttaattcgctaaccattggggaaaattttgcaaagtggttcagttcttgtcgatattcccctgattgatgagagcttctacg |
2921915 |
T |
|
| Q |
177 |
gggatagaataaataagtacaaagaggagttgaaaacagttggagtga |
224 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2921914 |
gggataaaataaataagtatgaagaggagttgaaaacaattggagtga |
2921867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 2931424 - 2931217
Alignment:
| Q |
15 |
cagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttacatgt---ggatacagacctccttcgaagtcattcttaattggttcatggtt |
111 |
Q |
| |
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|||||| ||||||| | || ||||||||||||| |||||||||||||| || |||| || ||||||| |||||||||||||||||||||| | |
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| T |
2931424 |
cagagaggttcttggcatgcataaaagaaggcagctggcttaaagttacgggtaatggattcatgtctccttcaaagtcattcttaattggttcat---t |
2931328 |
T |
|
| Q |
112 |
ggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaa |
211 |
Q |
| |
|
|| ||| || ||||||| |||||||||||||| || |||||| | || ||||| ||||||||||| || ||||||||| ||||||||||||| |||||| |
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| T |
2931327 |
gggaaatattttgcaaagtggttcagttcttgtggatattcccttaatagatgaaagcttctatggagagagaataaatgagtacaaagaggaattgaaa |
2931228 |
T |
|
| Q |
212 |
acagttggagt |
222 |
Q |
| |
|
||| ||||||| |
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| T |
2931227 |
acaattggagt |
2931217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 2947969 - 2947868
Alignment:
| Q |
123 |
tgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagt |
222 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||| ||||||||| |
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| T |
2947969 |
tgcaaagtggttcagatcttgttgacatccccctgattgatgagagcttctatggggaaagaataaatgcgtacaaagaagagttaaaaagagttggagt |
2947870 |
T |
|
| Q |
223 |
ga |
224 |
Q |
| |
|
|| |
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|
| T |
2947869 |
ga |
2947868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 37796873 - 37796716
Alignment:
| Q |
67 |
tggatacagacctccttcgaagtcattcttaattggttcatggttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgag |
166 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||| | || |||| ||| || ||||||| ||||| || |||||||| || ||||| ||||||||| |
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| T |
37796873 |
tggatacagtcctccttcaaagtcgttcttaattcgctcgccattggggaaaattttgcaaagtggttcggtgcttgttgatatccccctcattgatgag |
37796774 |
T |
|
| Q |
167 |
agcttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagtga |
224 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
37796773 |
agcttctatggggatagaataaacaagtatgaagaggagttgaaaacaattggagtga |
37796716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 28025926 - 28025714
Alignment:
| Q |
15 |
cagagatgttcttgaaaggcctaaaagaaggcagatggcttaaagttac----atgtggatacagacctccttcgaagtcattcttaattggttcatggt |
110 |
Q |
| |
|
|||||| ||| |||||| | ||||||| ||||| |||||||||||||| || ||||||||| |||||||| ||||| ||||||||| | || | |
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| T |
28025926 |
cagagaggtttttgaaatgtataaaagatggcagctggcttaaagttaccgtcat-tggatacaggcctccttcaaagtcgttcttaattcgctcgccat |
28025828 |
T |
|
| Q |
111 |
tggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgagagcttctatggggatagaataaataagtacaaagaggagttgaa |
210 |
Q |
| |
|
||| |||| || ||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||| |
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|
| T |
28025827 |
tgggaaaatttttgcaaagtggttcagttcttgttgatatccccctgattgacgagagcttctatggggatagaataaacaagtatgaagaagagttgaa |
28025728 |
T |
|
| Q |
211 |
aacagttggagtga |
224 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
28025727 |
aactgtaggagtga |
28025714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 1505710 - 1505865
Alignment:
| Q |
67 |
tggatacagacctccttcgaagtcattcttaattggttcatggttggaaaaacttctgcaaaggggttcagttcttgttgacattcccctgattgatgag |
166 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| |||| ||| ||| || ||||||| |||||| ||||||||||||||||||||||||| ||| |
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| T |
1505710 |
tggatacatgcctccctcaaagtcattcttaattggctcatcattgcggaaaattttgcaaagtggttcatttcttgttgacattcccctgattgacgag |
1505809 |
T |
|
| Q |
167 |
agcttctatggggatagaataaataagtacaaagaggagttgaaaacagttggagt |
222 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| ||| |||||||||| ||| ||||| |
|
|
| T |
1505810 |
agcttctacgggaatagaataaatgagtacacagaagagttgaaaatagtcggagt |
1505865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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