View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_88 (Length: 242)
Name: NF15302_high_88
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_88 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11805552 - 11805361
Alignment:
| Q |
1 |
tcataagccacaacatgttcaagccaagtactaaataatatctgctcgcctccatttatatcaaagatcaaactgagtggcgatgcaaaccaaactgctt |
100 |
Q |
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| T |
11805552 |
tcataagccacaacatgttcaagccaaatactaaataatatctgctcgcctccatttatatcaaagatcaaactgagtggcgatgcaaaccaaactgctt |
11805453 |
T |
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| Q |
101 |
tagaccagccacattccataaataaatggttaatactttcttgcttctggtcgcataaacagcagagaggggagaacattgaactcctctatta |
194 |
Q |
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| T |
11805452 |
tagaccagccacattccataaataaatggttaatactttcttgctgctggtcgcataaacagc--agaggggagaacattgaactcctctatta |
11805361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 20781406 - 20781230
Alignment:
| Q |
8 |
ccacaacatgttcaagccaagtactaaataatatctgctcgcctccatttatatcaaagatcaaactgagtggcgatgcaaaccaaactgctttagacca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
20781406 |
ccacaacatgttcaagccaagtactaaataatatctgctcacctccatttatatcaaagattaaaccgagtggcgatgcaaaccaaactgctttagacca |
20781307 |
T |
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| Q |
108 |
gccacattccataaataaatggttaatactttcttgcttctggtcgcataaacagcagagaggggagaacattgaactc |
186 |
Q |
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| T |
20781306 |
gccacactacataaataaatggttaatactttcttggtgctggtcacataaacagc--agaggggagaacattgaactc |
20781230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 1171665 - 1171613
Alignment:
| Q |
82 |
gatgcaaaccaaactgctttagaccagccacattccataaataaatggttaat |
134 |
Q |
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| T |
1171665 |
gatgcaaaccaaactgctttagcccaatcacaatccataaatacatggttaat |
1171613 |
T |
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