View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_high_90 (Length: 239)
Name: NF15302_high_90
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41819286 - 41819057
Alignment:
| Q |
1 |
tctttcttttataagttgggaatgaccggcatacacagtgttttgctggtatgttttcaactgatttaattgaagtcctcaacttttttccttgttgtgt |
100 |
Q |
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| T |
41819286 |
tctttcttttataagttgggaatgaccggcatacacagtgttttgctggtatgttttcaactgatttaattgaagtcctcaaattttttccttgttgtgt |
41819187 |
T |
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| Q |
101 |
cactactatttaacaaatttcttttaataaattcaatagtttaatcgacagtctcataattcatatgcagtactatttgaaagctgtttttggtttcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41819186 |
cactactatttaacaaatttcttttaataaattccatagtataatcgacagtctcataattcatatgcagtactatttgaaagctgtttttggtttcaac |
41819087 |
T |
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| Q |
201 |
aaaaatcagttctcagaacttctgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41819086 |
aaaaatcagttctcagaacttctgatgatg |
41819057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41825892 - 41825668
Alignment:
| Q |
1 |
tctttcttttataagttgggaatgaccggcatacacagtgttttgctggtatgttttcaactgatttaattgaagtcctcaacttttttccttgttgtgt |
100 |
Q |
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|||||||||||| ||||||||||| | || ||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
41825892 |
tctttcttttatgagttgggaatgtctggtataaccacagttttgctggtatgttttcaaccgatttaattgaattcctcaacttttttccttgttgtgt |
41825793 |
T |
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| Q |
101 |
cactactatttaacaaatttcttttaataaattcaatagtttaatcgacagtctcataattcatatgcagtactatttgaaagctgtttttggtttcaac |
200 |
Q |
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|||||||||||||||||||||||| | ||||| |||| || |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
41825792 |
tactactatttaacaaatttcttttggttaattccatagctt----gacagtctca-aatttctatgcagtactatttgaaagctgtttttggttttaac |
41825698 |
T |
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| Q |
201 |
aaaaatcagttctcagaacttctgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41825697 |
aaaaatcagttctcagaacttctgatgatg |
41825668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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