View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_high_91 (Length: 237)
Name: NF15302_high_91
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_91 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 343168 - 342960
Alignment:
| Q |
1 |
taaaggctaaaatgatatagacatttttgttaatgatgaacttgaagcaatattggggaagaaatgattgacatcaccattgatgcaacaaaagttccta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
343168 |
taaaggctaaaatgatatagatatttttgttaatgatgaacttgaagcaatattggggaaga---------catcaccattgatgcaacaaaagttccta |
343078 |
T |
|
| Q |
101 |
attaatgatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttcctttccactcttcaccagg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
343077 |
at----gatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttcctttccactcttcaccagg |
342982 |
T |
|
| Q |
201 |
tttgagagtaattgctttttct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
342981 |
tttgagagtaattgctttttct |
342960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University