View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_high_97 (Length: 226)
Name: NF15302_high_97
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_high_97 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4915383 - 4915169
Alignment:
| Q |
1 |
cagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4915383 |
cagtttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatg |
4915284 |
T |
|
| Q |
101 |
tcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4915283 |
tcggaagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagct |
4915184 |
T |
|
| Q |
201 |
cgatgtaattttcat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4915183 |
cgatgtaattttcat |
4915169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 1505621 - 1505432
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcggaagc |
108 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1505621 |
gaatccaatccaaaagcaaaaaggcattgtctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatgtaaggtacatcggaagc |
1505522 |
T |
|
| Q |
109 |
tccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctag |
198 |
Q |
| |
|
|| |||||||| |||||||||| |||||||| ||| | | || || ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505521 |
tctaacatgggctttgaggaaatcaataagcatcctagagcttgaattttgacctgcataagaagatgcatttaggtacgcctttcctag |
1505432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 2948098 - 2948294
Alignment:
| Q |
5 |
ttctgaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcgg |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
2948098 |
ttctgaatccaatccaaaagcaaaaaggcattttctttggtaagtgttgtatctgcagctgacaacccagcatttggaggatgtataaaagggatgtcgg |
2948197 |
T |
|
| Q |
105 |
aagctccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagctc |
201 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| | || || |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2948198 |
aagctttaacatggcttttgaggaaagcaataaacatctcagaatctgtacattggcctgcataagaagatgcctttaggtacacctttcctagctc |
2948294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 2931455 - 2931644
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcggaagc |
108 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
2931455 |
gaatccaatccaaaagtaaaaaggcattttctttggtgagttgagtatctgcagctgaaaacccagcatttggaggagatagataaggtatgtcagaagc |
2931554 |
T |
|
| Q |
109 |
tccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagctc |
201 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| |||||||| ||||| |||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
2931555 |
tccaacatgatttttgaggaattcaataagcttcccagaatctgtagattggtctgcat---aagatgcatttaggtacatctttcctagctc |
2931644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 2922110 - 2922316
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcggaagc |
108 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2922110 |
gaatccaatccaaaagcaaaaaggcattgtctttggtaagtggtgtatcaacggcggaaaacccagcatttggaggagatatataaggtatgtcagaagc |
2922209 |
T |
|
| Q |
109 |
tccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagctcgatgtaa |
208 |
Q |
| |
|
||||||||| ||| |||||||| ||| ||| || | || ||||| |||| ||||||| ||| |||| ||||||||| | ||||| ||||||| ||| |
|
|
| T |
2922210 |
tccaacatgagttgtgaggaaattaattagcatctcggaacctgtaaattgacctgcatgagatgatgaatttaggtaatcatttccaagctcgacataa |
2922309 |
T |
|
| Q |
209 |
ttttcat |
215 |
Q |
| |
|
||||||| |
|
|
| T |
2922310 |
ttttcat |
2922316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 3011309 - 3011103
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcggaagc |
108 |
Q |
| |
|
||||||| |||||||| | || ||||| |||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3011309 |
gaatccactccaaaagtagaaatgcattgtctttggtaagtggtgtatccgcagctgaaaatctagcatttggaggagatatataaggtatgtcagaagc |
3011210 |
T |
|
| Q |
109 |
tccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagctcgatgtaa |
208 |
Q |
| |
|
| |||||| ||||||||||| |||||| |||||| |||| ||| |||||||||||||||||| |||||||||| |||||||||||||| | ||| |
|
|
| T |
3011209 |
tttaacatgagttttgaggaattcaataaatttcccagaatccatatgttggcctgcataagaagaatcatttaggtatgcctttcctagctcaacataa |
3011110 |
T |
|
| Q |
209 |
ttttcat |
215 |
Q |
| |
|
||||||| |
|
|
| T |
3011109 |
ttttcat |
3011103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 37796959 - 37797151
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatctgcggctgaaaacccagcatttggaggagatatataaggtatgtcggaagc |
108 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||||||||||| || | |||||||||||||||||||| |||||||||| ||| ||||| ||||| |
|
|
| T |
37796959 |
gaatccaatccaaaagcaaaaaggcattgtttttggtaagtggtgtgtcaacagctgaaaacccagcatttggtggagatatatgaggaatgtcagaagc |
37797058 |
T |
|
| Q |
109 |
tccaacatgggttttgaggaaaccaataagcttcccataatctgtatattggcctgcataagaagatgcatttaggtacgcctttcctagctc |
201 |
Q |
| |
|
| ||||||| ||| |||||||| |||||||||| || || ||||| |||||||||||||||| || | |||||||||| ||||||| ||||| |
|
|
| T |
37797059 |
ttcaacatgagttgtgaggaaatcaataagctttccggaacctgtaaattggcctgcataagatgaggtatttaggtactcctttccgagctc |
37797151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 28025957 - 28026005
Alignment:
| Q |
9 |
gaatccaatccaaaagcaaaagggcattttctttggtaagtggtgtatc |
57 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
28025957 |
gaatccaatccaaaagcaagaaggcattttctttggtaagtggtgtatc |
28026005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University