View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_1 (Length: 930)
Name: NF15302_low_1
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 871; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 871; E-Value: 0
Query Start/End: Original strand, 6 - 914
Target Start/End: Complemental strand, 45589766 - 45588861
Alignment:
| Q |
6 |
agcatcacagaacaacaaaagtactaccataactacccatttctggtgttatatattatgatctgaatcaagaagcttggaactaaacagtgttggatgg |
105 |
Q |
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| T |
45589766 |
agcatcaaagaacaacaaaagtactaccataactacccatttctggtgttatatattatgatctgaatcaagaagcttggaactaaacagtgttggatgg |
45589667 |
T |
|
| Q |
106 |
cgtctaaaaggcgaatttattggaagatgaatagttggaatgaaagaaccattacttgaggagttcaagatctgaacatggttggattttctttgaatat |
205 |
Q |
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| T |
45589666 |
cgtctaaaaggcgaatttattggaagatgaatagttggaatgaaagaaccattacttgaggagttcaagatctgaacatggttggattgtctttgaatat |
45589567 |
T |
|
| Q |
206 |
cactactttccattgatggagcattcagagtactagtaaaaagtgatggcaatggcataacagaaggacaaaaaagtaactgtgaattaccagatgaatt |
305 |
Q |
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| T |
45589566 |
cactactttccattgatggagcattaagagtactagtaaaaagtgatggcaatggcataacagaaggacaaaaaagtaactgtgaattaccagatgaatt |
45589467 |
T |
|
| Q |
306 |
aggtactgtcaaatttgatgaagatgatgatgaaaattgcataccactgccactagtacttatttgataagaaggaaataaattaccatgatggcttcca |
405 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45589466 |
aggtactgtcaaatttga---agatgatgatgaaaattgcataccactgccactagtacttatttgataagaaggaaataaattaccatgatggcttcca |
45589370 |
T |
|
| Q |
406 |
aattgtgataaagatagagtacttgaaggatccaagttatatggaaaaggaaaaccatttgatgaattattagtattataataattacccttttctgaac |
505 |
Q |
| |
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| T |
45589369 |
aattgtgataaagatagagtgcttgaaggatccaagttatatggaaaaggaaaaccatttgatgaattattagtattataataattacccttttctgaac |
45589270 |
T |
|
| Q |
506 |
tttcagcttctttacctttggtttgcttgataccataaaaaccacctccaagagaaaaacaagtactacctgctggttgctgaaatagggtttgttgttg |
605 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45589269 |
tttcagcttctttacctttggtttgattcataccataaaaaccacctccaagagaaaaacaagtactacctgctggttgctgaaatagggtttgttgttg |
45589170 |
T |
|
| Q |
606 |
agtgaaactttgaggaatatcaagtggtggtaatttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaacca |
705 |
Q |
| |
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| T |
45589169 |
agtgaaactttgaggaatatcaagtggtggtaatttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaacca |
45589070 |
T |
|
| Q |
706 |
agtctatcttgaagatcatatagctgaattgctgttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgt |
805 |
Q |
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| T |
45589069 |
agtctatcttgaagatcatatagctgaattgctgttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgt |
45588970 |
T |
|
| Q |
806 |
cttttcctcctaaagaacgtgacactctcactattcttggatttcttaatgatgtccattgtcttgatgtagctattgctttgttggagaatttctctga |
905 |
Q |
| |
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| T |
45588969 |
cttttcctcctaaagaacgtgacactctcactattcttggatttcttaatgatgtccattgtcttgatgtagctattgctttgttggagaatttctctga |
45588870 |
T |
|
| Q |
906 |
ttccattct |
914 |
Q |
| |
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||||||||| |
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| T |
45588869 |
ttccattct |
45588861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 613 - 854
Target Start/End: Complemental strand, 7969404 - 7969163
Alignment:
| Q |
613 |
ctttgaggaatatcaagtggtggtaatttatcaatatcagattgagttgcttcaattaaccattcaacaactttactaggttgacttaaaccaagtctat |
712 |
Q |
| |
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|||||||||| | |||||| || | ||||||||| || ||| |||||||||| |||||| |||| |||||||| ||||| | |||||||||| ||| |
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| T |
7969404 |
ctttgaggaaattgaagtggagggagtttatcaatgtctaattttgttgcttcaagtaaccaatcaattactttacttggttgtcctaaaccaagtttat |
7969305 |
T |
|
| Q |
713 |
cttgaagatcatatagctgaattgctgttggtacagacaacctaatcctacggtctcttaatcctctaattgtgcaaactttgctgtgtctgtcttttcc |
812 |
Q |
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||||||||||||||| |||||||||||||| || || | ||| ||||| | |||||||| ||||| ||||| ||||||||||| || || ||||| || |
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| T |
7969304 |
cttgaagatcatataattgaattgctgttggaactgaaagccttatccttctatctcttaaccctcttattgtacaaactttgctatgcctatctttgcc |
7969205 |
T |
|
| Q |
813 |
tcctaaagaacgtgacactctcactattcttggatttcttaa |
854 |
Q |
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| T |
7969204 |
tccaaatgttcttgatactctcacaattcttggatttcttaa |
7969163 |
T |
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