View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_100 (Length: 242)
Name: NF15302_low_100
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 28902075 - 28901861
Alignment:
| Q |
12 |
aaagggataatggtaatggggcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaag |
111 |
Q |
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| T |
28902075 |
aaagggataatggtaatggagcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaag |
28901976 |
T |
|
| Q |
112 |
tgtatttgcagctataattaattcaaacatgaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28901975 |
tgtatttgcagctataattaattcaaacatgaaacttgtctacttgaagagaagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaa |
28901876 |
T |
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| Q |
212 |
gtgttgggaagttat |
226 |
Q |
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||||||||||||||| |
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| T |
28901875 |
gtgttgggaagttat |
28901861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 28892121 - 28891909
Alignment:
| Q |
12 |
aaagggataatggtaatggggcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaag |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
28892121 |
aaagggataatggtaatgaggcattcaaatttccaaagcagagaaatttgaattcaactacaaaaccttgtcagaatctactctctcaagagcagccaag |
28892022 |
T |
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| Q |
112 |
tgtatttgcagctataattaattcaaacatgaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaa |
211 |
Q |
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| T |
28892021 |
tggatttgcagctataattaattcaaacataaaacttgtctacttaaggaggaccttgattgatgagcttttaaagaagccagaaacctttgatgtcaaa |
28891922 |
T |
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| Q |
212 |
gtgttgggaagtt |
224 |
Q |
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||||||||||||| |
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| T |
28891921 |
gtgttgggaagtt |
28891909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 28916477 - 28916276
Alignment:
| Q |
25 |
taatggggcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaagtgtatttgcagct |
124 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| ||| || |||||| |||||||| |||||||| |
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| T |
28916477 |
taatgaggcattcaaatttcgaaagcacagaaatttgaattcaactataaaatcttgtcagaatgtacgttccaaagagctgccaagtggatttgcagga |
28916378 |
T |
|
| Q |
125 |
ataattaattcaaacatgaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaagtgttgggaagtt |
224 |
Q |
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| T |
28916377 |
ataattagttcaaacataaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagatacctttgctggcaaagtgttgggaagtt |
28916278 |
T |
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| Q |
225 |
at |
226 |
Q |
| |
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|| |
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| T |
28916277 |
at |
28916276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 28925711 - 28925514
Alignment:
| Q |
26 |
aatggggcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaagtgtatttgcagcta |
125 |
Q |
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|||| |||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| ||| || |||||| |||||||| ||||||||||| |
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| T |
28925711 |
aatgaggcattcaaatttcgaaagcacagaaatttgaattcaactataaaatcttgtcagaatgtacgttcgaaagagctgccaagtggatttgcagcta |
28925612 |
T |
|
| Q |
126 |
taattaattcaaacatgaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaagtgttgggaagtta |
225 |
Q |
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| T |
28925611 |
tagttagttcaaacataaaacttgtctacctgaagaggagcttaattgaggagcttttgaagcaaccagaaacc---gatggcaaagtgttgggaagtta |
28925515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 28935302 - 28935113
Alignment:
| Q |
31 |
ggcattcaaatttccaaagcagggaaatttgaattcaactacaaaaccttgtcagaatatactctctgaagagcagccaagtgtatttgcagctataatt |
130 |
Q |
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|||||||||||||||||||||| ||||||| || || |||||||| ||||||||| | | | |||||| | | ||||||| | ||||||||||||| |
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| T |
28935302 |
ggcattcaaatttccaaagcagagaaatttaaactcggctacaaaatcttgtcagagtgcagtttctgaaaaacttccaagtggctatgcagctataatt |
28935203 |
T |
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| Q |
131 |
aattcaaacatgaaacttgtctacttgaagaggagcttaattgaggagcttttgaagcaaccagaaacctttgatggcaaagtgttggga |
220 |
Q |
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| T |
28935202 |
agttcaaacctaaagcttgtctacttaaagagaaccttaatcgaggagcttcggaagcaaccagaaacctttgatgacaaagtgttggga |
28935113 |
T |
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