View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_108 (Length: 228)
Name: NF15302_low_108
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_108 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 34335337 - 34335560
Alignment:
| Q |
6 |
atatatattgtcaaagaaaagagcatgtgattgaattgtttcattcgatggatcacaaaacaaatacnnnnnnnnnnnccttcaattggtagatcaatat |
105 |
Q |
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| T |
34335337 |
atatatattgtcaaagaaaagagcatgtgattgaattgtttcattcgatggatcacaaaacaaatacaaaaaaaaaaaccttcaattggtagatcaatat |
34335436 |
T |
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| Q |
106 |
aacaatcggtatatcaccatttcaattgttcaatagcagttccaacttgaaagattgaa-nnnnnnnnnnnnnnnggtacaaaccaatttgaagcattga |
204 |
Q |
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| T |
34335437 |
aacaatcggtatatcaccatttcaattgttcaatagcagttccaacttgaaagattgaatattttttatttttttggtacaaaccaatttgaagcattga |
34335536 |
T |
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| Q |
205 |
atctaaaggataataataaaatta |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
34335537 |
atctaaaggataataataaaatta |
34335560 |
T |
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