View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_109 (Length: 227)
Name: NF15302_low_109
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_109 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39952344 - 39952118
Alignment:
| Q |
1 |
agagcaaaataaaacgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952344 |
agagcaaaataaaacgaaaaatgctttcttagtggatgaaattatatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacct |
39952245 |
T |
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| Q |
101 |
cataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952244 |
cataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagt |
39952145 |
T |
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| Q |
201 |
aattgcaatcaaatctaaagctaaatc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39952144 |
aattgcaatcaaatctaaagctaaatc |
39952118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 30339676 - 30339468
Alignment:
| Q |
5 |
caaaataaaacgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcata |
104 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339676 |
caaaatcaaatgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcata |
30339577 |
T |
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| Q |
105 |
aatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
30339576 |
aatgtcatcaaattaatcacttttcataattgttgaatgaaatgatttgaattgcttgagagaaattactctcagccaagttatatataaccaagtgatt |
30339477 |
T |
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| Q |
205 |
gcaatcaaa |
213 |
Q |
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||||||||| |
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| T |
30339476 |
gcaatcaaa |
30339468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 10116848 - 10116916
Alignment:
| Q |
137 |
ttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattg |
205 |
Q |
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|||||||| ||||||||||||||| || ||||||| | |||||| ||||| |||||||||||||||| |
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| T |
10116848 |
ttgaatgaattgatttgaattgcttgagagaaattattgtcagccctgttatttataaccaagtaattg |
10116916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 34230259 - 34230435
Alignment:
| Q |
43 |
tgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaat |
142 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| |
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| T |
34230259 |
tgtatgaccatcagcaaaatattctcctatagtatgttttctgattcatctatcacctcataaatgtcatcaaacttatcacttttaataattgttcaat |
34230358 |
T |
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| Q |
143 |
gagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattgcaatcaaatctaaa |
219 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
34230359 |
gagatgatttgaattgcttgagagaaattactctcagccaagttatatataaccaagggatagcaatcaaatctaaa |
34230435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 28546919 - 28547013
Alignment:
| Q |
133 |
attgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatc |
227 |
Q |
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|||||| |||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||| |
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| T |
28546919 |
attgttaaatgagatgatttgaattgcttgagaaaaattactctcagccttgttatttataaccaagtgattgcaatcaaatctacagctaaatc |
28547013 |
T |
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