View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_111 (Length: 220)
Name: NF15302_low_111
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_111 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 25583636 - 25583471
Alignment:
| Q |
46 |
tttaagcttgtgaaaacagcttaaagcttatatgaaaatagttttatct-ttttgttttagaaatagcctatacagaaacacatacatatgatgataagc |
144 |
Q |
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| T |
25583636 |
tttaagcttgtgaaaacagcttaaagcttatatgaaaatagttttatcttttttgttttagaaatagcctatacagaaacacatacatat---------- |
25583547 |
T |
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| Q |
145 |
ggttaattaaattgtttacccaaacgtgtacataagctattattattagtatttaaaataagaaatgaaaggaacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
25583546 |
ggttaattaaattgtttacccaaacgtgtacataagctattattgttagtatttaaaataagaaatgaagggaacc |
25583471 |
T |
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