View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_112 (Length: 218)

Name: NF15302_low_112
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_112
NF15302_low_112
[»] chr4 (1 HSPs)
chr4 (1-207)||(26647294-26647520)
[»] chr8 (3 HSPs)
chr8 (1-107)||(37002135-37002241)
chr8 (1-79)||(36992422-36992500)
chr8 (106-206)||(37002274-37002374)
[»] chr1 (1 HSPs)
chr1 (109-206)||(12796262-12796358)
[»] chr3 (2 HSPs)
chr3 (109-193)||(27442791-27442874)
chr3 (109-193)||(27445947-27446030)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26647294 - 26647520
Alignment:
Q  1 caacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttactta 100  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||    
T  26647294 caacatttgtacaacatagactcctacaaaagcataaaatacaaacttagactcctgcaacgttggtacaacatttgtactgttgaaa-tgatttactta 26647392  T
Q  101 gctatatt---------------------attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggag 179  Q
    ||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647393 gctatattgttcctatcctgtaattaattattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggag 26647492  T
Q  180 tcattttatttagtggttttcatctctc 207  Q
    ||||||||||||||||||||||||||||    
T  26647493 tcattttatttagtggttttcatctctc 26647520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37002135 - 37002241
Alignment:
Q  1 caacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttactta 100  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  37002135 caacatttatacaacatagactcctacaaaagcatcaaatacaaacttagactcctgcaacgtttgtacaacatttgtactgttgaaactgatttactta 37002234  T
Q  101 gctatat 107  Q
    |||||||    
T  37002235 gctatat 37002241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 36992422 - 36992500
Alignment:
Q  1 caacatttgtacaacatagacttctacaaaagcatcaaatacaaacttagactcctacaacgtttgtacaacatctgta 79  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  36992422 caacatttgtacaacatagactcctacaaaagcatcaaatacaaacttagactcctgcaacgtttgtacaacatttgta 36992500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 37002274 - 37002374
Alignment:
Q  106 attattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 205  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||  ||||||||||||| ||| ||| | || |||||||||||||||| |||||||||||    
T  37002274 attattcctatttgttagggagtgctaatggaattgacttagtgtttccacaattcacatttaagttagtgtagtcattttatttagttgttttcatctc 37002373  T
Q  206 t 206  Q
    |    
T  37002374 t 37002374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 12796262 - 12796358
Alignment:
Q  109 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctct 206  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| |||||| | ||| ||||||    
T  12796262 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagttggttttatctct 12796358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 27442791 - 27442874
Alignment:
Q  109 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 193  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27442791 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27442874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 27445947 - 27446030
Alignment:
Q  109 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 193  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27445947 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27446030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University