View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_118 (Length: 212)
Name: NF15302_low_118
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 37242182 - 37242374
Alignment:
| Q |
13 |
agatgaagagaagattccaattagacattgatagttttacagctaatggagtgaatattttagttttgctttcaat----gtacaaaagattagattcag |
108 |
Q |
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| T |
37242182 |
agataaagagaagattccaattagacattaatagttttacaggtaatggggtgaatattttagttttgctttcaatatacgtactaaagatgagattcag |
37242281 |
T |
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| Q |
109 |
aatattatatgttagcatagctagtatat----atgttaagacatgaag--atagttagatagattcatagaccttatatcttaggcatacat |
195 |
Q |
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| T |
37242282 |
aatattatatgttagcatagctagtatatatgcatgttaagacatgaagatatagttagatagattcatagaacttatatcttaggcatacat |
37242374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 37317358 - 37317444
Alignment:
| Q |
21 |
agaagattccaattagacattgatagttttacagctaatggagtgaatattttagttttgctttc-aatgtacaaaagattagattc |
106 |
Q |
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| T |
37317358 |
agaagattccaattagacattgatagtctaacagcttatgatgtgaatattttatttttgctttcaaatgtacataagataagattc |
37317444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 16574112 - 16574055
Alignment:
| Q |
35 |
agacattgatagttttacagctaatggagtgaatattttagttttgctttcaatgtac |
92 |
Q |
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| T |
16574112 |
agacattaatagttttaccgctcatggagcgaatattttatttttgctttcaatgtac |
16574055 |
T |
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