View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_12 (Length: 590)
Name: NF15302_low_12
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 145 - 566
Target Start/End: Complemental strand, 51905599 - 51905177
Alignment:
| Q |
145 |
cccatccgagcctcaccgatccaaatcggtctcattcaaatgttaccactaccaactcttggagttggcttggaagcttgatattcttgaaaatattaag |
244 |
Q |
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| T |
51905599 |
cccatccgagcctcaccgatccaaatcggtctcattcaaatgttaccactaccaactcttggagttggcttggaagcttgatattcttgaaaatattaag |
51905500 |
T |
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| Q |
245 |
tattttggttggtttattt-gttaggttctacttaagaacttgttttgtatgtccagacatcttacaatggattcttcttgcaaactttatagactcttg |
343 |
Q |
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| T |
51905499 |
tattttggttggtttattttgttaggttctacttaagaacttgttttgtatgtccagacatcttacaatggattcttcttgcaaactttatagactcttg |
51905400 |
T |
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| Q |
344 |
aatgattcttgccttcatactctttaaaattgttcacttaaatgtccgatcaaatttccttatgttgaatatgcatcaacggttatcaacatgcacacac |
443 |
Q |
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| T |
51905399 |
aatgattcttgccttcatactctttaaaattgttcacttaaatgtccgatcaaatttccttatgttgaatatgcatcaacggttatcaacatgcacacag |
51905300 |
T |
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| Q |
444 |
aactaaaagataaattgcttgggcaaacctatcatgatacgaacaaattggcttctcgaggagcacggacagagcaattcatacaagaaagagaaaagag |
543 |
Q |
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| T |
51905299 |
aactaaaagataaattgcttgggcaaacctatcatgatacgaacaaattggcttctcgaggagcacggacagagcaattcatacaagaaagagaaaagag |
51905200 |
T |
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| Q |
544 |
gcgtgttagctgagggcaagatc |
566 |
Q |
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| T |
51905199 |
gcgtgtttgctgagggcaagatc |
51905177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 51905711 - 51905636
Alignment:
| Q |
36 |
agatgaagaagaatagggtgagacaaaaagtaattctatttaaaaattaagaatattttagtaaactccctgttaa |
111 |
Q |
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| T |
51905711 |
agatgaagaagaatagggtgagacaaaaagtaattctatttaaaaattaagaatattttagtaaactccctgttaa |
51905636 |
T |
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