View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_13 (Length: 587)
Name: NF15302_low_13
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 55299824 - 55300386
Alignment:
| Q |
18 |
ttttatatgttaaaaaagaaagaaaagacgtgaattacatgaaaaataataagagtatatggaagtcaaagacccacatggacagacagtagagttgt-- |
115 |
Q |
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| T |
55299824 |
ttttatatgttaaaaaagaaagaaaagacgtgaattacatgaaaaataataagagtatatggaagtcaaagacccacatggacagacagtagagttgtcg |
55299923 |
T |
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| Q |
116 |
-ggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaagc |
214 |
Q |
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| T |
55299924 |
tggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaagc |
55300023 |
T |
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| Q |
215 |
tccgactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagcccg |
314 |
Q |
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| T |
55300024 |
tccaactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagcccg |
55300123 |
T |
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| Q |
315 |
actcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggt |
414 |
Q |
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| T |
55300124 |
actcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtggt |
55300223 |
T |
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| Q |
415 |
tgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatgctcacctctcttctgatagtccctactacaagggtctcaccga |
514 |
Q |
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| T |
55300224 |
tgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctctcttctgatagtccctactacaagggtcttaccga |
55300323 |
T |
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| Q |
515 |
tcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
577 |
Q |
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| T |
55300324 |
tcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
55300386 |
T |
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