View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_15 (Length: 563)
Name: NF15302_low_15
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 26833111 - 26832551
Alignment:
| Q |
1 |
atttcctaaaatgtagaataatcgagtaacgtttatgccattaaaaaaagttgaattagaaacgtaaaaattcaaggaagnnnnnnnnn-tgaaattcat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26833111 |
atttcctaaaatgtagaataatcgagtaacgtttatgccactaaaaaaagttgaattagaaacgtaaaaattcaaggaagaaaaaaaaaatgaaattcat |
26833012 |
T |
|
| Q |
100 |
ctttaatttggtcaagtatcattgacgctaacattggagacgaaaatcattttttccatctataattcaagctttttaaggagtgttaataattattaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26833011 |
ctttaatttggtcaagtatcattgacgctaacattggagacgaaaatcattttttccatctctaattcaagctttttaaggagtgttaataattattaat |
26832912 |
T |
|
| Q |
200 |
agcaagtcaatggactaatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832911 |
agcaagtcaatggactaatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaa |
26832812 |
T |
|
| Q |
300 |
gtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26832811 |
gtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatga |
26832712 |
T |
|
| Q |
400 |
aacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832711 |
aacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaa |
26832612 |
T |
|
| Q |
500 |
taatcctgatattggtcttgttcaggctcgctggaagtttggtaatttcctttgcttctcc |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26832611 |
taatcctgatattggtcttgttcaggctcgctggaagtttggtaatttccttttcttctcc |
26832551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 212 - 546
Target Start/End: Complemental strand, 26786178 - 26785847
Alignment:
| Q |
212 |
gactaatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgt |
311 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| | |||||||||| |
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|
| T |
26786178 |
gactaatgat-gggataaatttgtattaaa-ggtgattgtgaatgattgtggcaagtgaacaaa-aaaaattgcaggagttggtacaggaagaatgccgt |
26786082 |
T |
|
| Q |
312 |
agatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatg |
411 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| ||| |
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|
| T |
26786081 |
agatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatg |
26785982 |
T |
|
| Q |
412 |
tgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatat |
511 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || || | |||||| ||||||||||| ||||||||||| || |
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| T |
26785981 |
tcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaat |
26785882 |
T |
|
| Q |
512 |
tggtcttgttcaggctcgctggaagtttggtaatt |
546 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
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|
| T |
26785881 |
tggtctcgttcaggctcgctggaagtttggtaatt |
26785847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 277 - 543
Target Start/End: Complemental strand, 26791856 - 26791590
Alignment:
| Q |
277 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagc |
376 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
26791856 |
aaaaaatgcaggagtttgtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagc |
26791757 |
T |
|
| Q |
377 |
aggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttgg |
476 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26791756 |
tggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctc |
26791657 |
T |
|
| Q |
477 |
cgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggta |
543 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||| |
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|
| T |
26791656 |
cgaaccatcccttttcttgtcaataatcctgagattggtctcgttcaagctcgctggaagtttggta |
26791590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 285 - 546
Target Start/End: Complemental strand, 26822749 - 26822488
Alignment:
| Q |
285 |
caggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcat |
384 |
Q |
| |
|
||||| |||||||| | |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |
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|
| T |
26822749 |
caggaattggtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
26822650 |
T |
|
| Q |
385 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccat |
484 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| | ||||| || |
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|
| T |
26822649 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgat |
26822550 |
T |
|
| Q |
485 |
ccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatt |
546 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26822549 |
cccttttcttgtcaataatcctgaaattggtctcgttcaggctcgctggaagtttggtaatt |
26822488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 457
Target Start/End: Original strand, 41546207 - 41546352
Alignment:
| Q |
312 |
agatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatg |
411 |
Q |
| |
|
||||||||||| ||||| | || ||||||||||| | ||||| |||||||||||||||||||| ||||| | || || |||||||| |||||||||| |
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|
| T |
41546207 |
agatggagaagaaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatg |
41546306 |
T |
|
| Q |
412 |
tgaaacaatgtgattatgttgctatctttgatgctgattttcaacc |
457 |
Q |
| |
|
| |||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
41546307 |
tcaaactttgtgactatgttgccatctttgatgctgattttcaacc |
41546352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 277 - 552
Target Start/End: Original strand, 41917396 - 41917671
Alignment:
| Q |
277 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagc |
376 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41917396 |
aaaaaatgtaggagttggtgcaactagaatgccaaagatgggcaagcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagc |
41917495 |
T |
|
| Q |
377 |
aggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttgg |
476 |
Q |
| |
|
||| || ||||| || |||||||| |||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
41917496 |
aggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaatatttgatgctgattttcaaccagagcctgattttttgtgg |
41917595 |
T |
|
| Q |
477 |
cgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaatttccttt |
552 |
Q |
| |
|
|| ||| | || || | || |||||||||| ||||| ||| |||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
41917596 |
cgtaccgtaccatttatggtgcataatcctgaaattgggcttattcaagctcgttggaaatttggtaattttcttt |
41917671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 544
Target Start/End: Complemental strand, 20239218 - 20239043
Alignment:
| Q |
369 |
tacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgatt |
468 |
Q |
| |
|
||||||||||||||||| || || ||| | |||| ||||||||| || || ||||| ||||||| || ||||||||||||||| || ||||||| |
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|
| T |
20239218 |
tacaaagcaggtgcattgaaagaaggactaaaacgtagctatgtcaagcattgtgaatatgttgtcatatttgatgctgattttagtcctcctcctgatt |
20239119 |
T |
|
| Q |
469 |
ttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaa |
544 |
Q |
| |
|
||||| | || |||| ||||| |||||| ||||||||| |||| ||||||||| | ||| |||| |||||||| |
|
|
| T |
20239118 |
ttcttagaagagccattccttttcttgttggtaatcctgaaattgctcttgttcaaggtcgttggagatttggtaa |
20239043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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