View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_16 (Length: 555)
Name: NF15302_low_16
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 59 - 549
Target Start/End: Original strand, 35696117 - 35696607
Alignment:
| Q |
59 |
atgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtggg |
158 |
Q |
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| T |
35696117 |
atgccatttttagctttccatcataaccaaatcatgttgtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtggg |
35696216 |
T |
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| Q |
159 |
tgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgt |
258 |
Q |
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| T |
35696217 |
tgagtctcagccataacaccggctgctccccctccatcaatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgt |
35696316 |
T |
|
| Q |
259 |
cgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatg |
358 |
Q |
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| T |
35696317 |
cgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatg |
35696416 |
T |
|
| Q |
359 |
gctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttc |
458 |
Q |
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| T |
35696417 |
gctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttc |
35696516 |
T |
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| Q |
459 |
ctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
549 |
Q |
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| T |
35696517 |
ctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
35696607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 532
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
420 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
519 |
Q |
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|||||||| |||||||||||||||||||| |||| || ||| |||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
520 |
ttctcattggaac |
532 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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