View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_18 (Length: 547)
Name: NF15302_low_18
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Original strand, 1744332 - 1744859
Alignment:
| Q |
17 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc |
116 |
Q |
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| T |
1744332 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagc |
1744431 |
T |
|
| Q |
117 |
ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatgcctaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1744432 |
ctctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattgtcttattcttatttcctagtgtcaagatggatgcctact |
1744531 |
T |
|
| Q |
217 |
aaaaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttaaaaagtataatttta--gtgtctt |
314 |
Q |
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| T |
1744532 |
aacaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttagaaagtataattttagtgtgtcct |
1744631 |
T |
|
| Q |
315 |
atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtg |
414 |
Q |
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| T |
1744632 |
atgaaccctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtg |
1744731 |
T |
|
| Q |
415 |
ttcatgatgttttgccatatatgtattactggcattgttctccaatgcagggtatgccatcattca---------gaacatcttgaaatctaaatatgac |
505 |
Q |
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| T |
1744732 |
ttcatgatgtgttgccatatatgtattactgccattgttctccaatgcagggtatgccatcattcacgatttcaggaacatcttgaaatctaaatatgac |
1744831 |
T |
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| Q |
506 |
tttaatttgcgacgtaccatattattta |
533 |
Q |
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| T |
1744832 |
tttaatttgcgacgtaccatattattta |
1744859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 1722223 - 1722425
Alignment:
| Q |
17 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatca--------ccaagggcacta |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
1722223 |
atgaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatccttagttggctataaaacgagtaccaagggcacta |
1722322 |
T |
|
| Q |
109 |
tttatagcctctgatgaagctttaaaatattgatcaataata-tttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatgg |
207 |
Q |
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| |||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||| |
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| T |
1722323 |
tatatagcctttgatgatgctttaaaatattgatcaataataatttttaaattaatgttgctccacattctcttcttcctatttcctaatctcaagatgg |
1722422 |
T |
|
| Q |
208 |
atg |
210 |
Q |
| |
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||| |
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| T |
1722423 |
atg |
1722425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 23577878 - 23577755
Alignment:
| Q |
350 |
tcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtgttcatgatgttttgccatatatgtattactggcat |
449 |
Q |
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|||||||||||| ||| | |||||||| ||||||||||||||| |||| |||||| || ||||||||||||||| ||||||| | || || | | ||| |
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| T |
23577878 |
tcaaagatattcaaatccacacattgatgaatcaagaatagacctttccaatctttcttcttgtgttcatgatgtgttgccatttgtgcatcagtaacat |
23577779 |
T |
|
| Q |
450 |
tgttctccaatgcagggtatgccat |
474 |
Q |
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|||||||||||||| |||||||||| |
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| T |
23577778 |
tgttctccaatgca-ggtatgccat |
23577755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 31822029 - 31821919
Alignment:
| Q |
319 |
accctttgttgtatcctcttcaacaatcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtgttca |
418 |
Q |
| |
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|||||||||||| || ||||||| ||| | ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||| || |||||||| |
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| T |
31822029 |
accctttgttgtctcatcttcaattatcctatcaaagatatttgaattcacacattggtgaatcaagaatagactttt-gcatctttcttgatgtgttca |
31821931 |
T |
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| Q |
419 |
tgatgttttgcc |
430 |
Q |
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||||| ||||| |
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| T |
31821930 |
cgatgtgttgcc |
31821919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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