View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_21 (Length: 539)
Name: NF15302_low_21
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_21 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 2834690 - 2835211
Alignment:
| Q |
1 |
ccggtgcaggcaaccagtttagatagtataagacnnnnnnnggcttcaaaacgatagtagcatcgatcttggttagcnnnnnnnncgatagtagagcgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2834690 |
ccggtgcaggcaaccagtttagatagtataagactttttttggcttcaaaacgatagtagcatcgatcttggttagcaaaaaaaacgatagtagagcgaa |
2834789 |
T |
|
| Q |
101 |
gtgtctaactttgaatttttaaataaatagttggtgaggaaatgatggatggatgaaaccggttggctgagacgcatacatatcgtccagatttacttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2834790 |
gtgtctaactttgaatttttaaataaatagttggtgaggaaatgatggatggatgaaaccggttggctgagacgcatacatatcgtccagatttacttta |
2834889 |
T |
|
| Q |
201 |
aatcaactaggcatttaaatttacagctacataacgatagtagcatcggtcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattat |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2834890 |
aatcaactaggcgtttaaatttacagctacataacgatagtagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattat |
2834989 |
T |
|
| Q |
301 |
tattattacaagggttgaaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaaagacgtctgattgtctgaatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2834990 |
tattattacaagggttgaaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaaagacgtctgattgtctgaatgg |
2835089 |
T |
|
| Q |
401 |
agtccagatataggtcttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacaccaaatgacaaataaaacagaaaagccaaagtcac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835090 |
agtccagatataggtcttggttacaaggttttgaatcaaagcttccagaaccaaattataaaacaccaaatgacaaataaaacagaaaagccaaagtcac |
2835189 |
T |
|
| Q |
501 |
gtagcgaatggaatccatattt |
522 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
2835190 |
gtagcgaatggaatccatattt |
2835211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 318 - 522
Target Start/End: Original strand, 2852780 - 2852991
Alignment:
| Q |
318 |
aaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaaagacgtctgattgtctgaatggagtccagatataggtc- |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2852780 |
aaggaaagctcccaccaatcttaaactctagaaattgaaaaagtaggaaagtaatgtcaaaagacgtctgattgtctgaaaggagtccagatataggtct |
2852879 |
T |
|
| Q |
417 |
------ttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacaccaaatgacaaataaaacagaaaagccaaagtcacgtagcgaatg |
510 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||| ||||| |
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| T |
2852880 |
tttttttttgttacaaggtttagaatcaaagcttccacaaccaaattataaaacagcaaataacaaataaaatagaaaagccaaagtcacttagtgaatg |
2852979 |
T |
|
| Q |
511 |
gaatccatattt |
522 |
Q |
| |
|
||||||| |||| |
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|
| T |
2852980 |
gaatccacattt |
2852991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 302 - 468
Target Start/End: Complemental strand, 2800566 - 2800407
Alignment:
| Q |
302 |
attattacaagggttgaaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaaagacgtctgattgtctgaatgga |
401 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| | | |||||| ||| || |||||| |||||| ||| |||| ||||||||||| |
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| T |
2800566 |
attattacaagggttggagaaaagctcccaccaatctgaaacaccaaaaatggcaaatgttggaaagaaatgtccaaa------tgat-gtctgaatgga |
2800474 |
T |
|
| Q |
402 |
gtccagatataggtcttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacacca |
468 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
2800473 |
gtccaaatataggtcttgattacaaggttttgaatcaaagcttccaaaactaaattataaaacacca |
2800407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 139 - 342
Target Start/End: Complemental strand, 2821533 - 2821323
Alignment:
| Q |
139 |
gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcatttaaatttacagctacataa |
234 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||| || ||| |||| |||| ||||||||||||||| ||||||||||||| ||| |
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| T |
2821533 |
gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa |
2821434 |
T |
|
| Q |
235 |
cgatag------tagcatcggtcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctc |
328 |
Q |
| |
|
||||| ||||||| || || ||||| |||||| | ||||||||| ||||| |||||||| |||||||||||||| | ||||| |||| || |
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|
| T |
2821433 |
tgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttg---attattattacaagagatgaagtaaagttc |
2821337 |
T |
|
| Q |
329 |
ccaccaatcttaaa |
342 |
Q |
| |
|
||||||||||||| |
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|
| T |
2821336 |
tcaccaatcttaaa |
2821323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 2771988 - 2771854
Alignment:
| Q |
175 |
catacatatcgtccagatttactttaaatcaactaggcatttaaatttacagctacataacgatagtagcatcggtcgtggttagcaaaataaaaatatt |
274 |
Q |
| |
|
|||||||||| || |||| |||| ||||||||||||| |||| | ||||||||| || | |||||||||||| | |||||||||||||||| ||||| |
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|
| T |
2771988 |
catacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatagtagcatcaagcttggttagcaaaataaacatatt |
2771889 |
T |
|
| Q |
275 |
cattcatatgaagtggttttgattattattattac |
309 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |
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|
| T |
2771888 |
catttgaatgaagtagttttgattattattattac |
2771854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 467
Target Start/End: Complemental strand, 2810050 - 2809978
Alignment:
| Q |
395 |
gaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacacc |
467 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| |||||||||||| ||||| || |||||||||||||||| |
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|
| T |
2810050 |
gaatggagtctagatatacgtcttgattacaagattttgaatcaaaacttccacaatcaaattataaaacacc |
2809978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 2834621 - 2834666
Alignment:
| Q |
96 |
gcgaagtgtctaactttgaatttttaaataaatagttggtgaggaa |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
2834621 |
gcgaagtgtctgactttgaatttttaaataaatagttggcgaggaa |
2834666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 468
Target Start/End: Complemental strand, 2761911 - 2761838
Alignment:
| Q |
395 |
gaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacacca |
468 |
Q |
| |
|
|||||||||| | ||| |||| ||| |||||||||||| ||||||| ||| | |||||||||||||||||||| |
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|
| T |
2761911 |
gaatggagtctaaataaaggtattgattacaaggttttcaatcaaacctttcacaaccaaattataaaacacca |
2761838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 5415534 - 5415464
Alignment:
| Q |
308 |
acaagggttgaaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaa |
378 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||||| | ||||||||||| | || ||||| ||||||||| |
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|
| T |
5415534 |
acaagagtttaagaaaagctcccaccaatcttaaaaaccagaaatggaaagactatgaaagaaatgtcaaa |
5415464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 2751951 - 2751902
Alignment:
| Q |
253 |
tggttagcaaaataaaaatattcattcatatgaagtggttttgattatta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
2751951 |
tggttagcaaaataaaaatattcattcaaatgaggatattttgattatta |
2751902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 2794403 - 2794342
Alignment:
| Q |
236 |
gatagtagcatcggtcgtggttagcaaaataaaaatattcattcatatgaagtggttttgat |
297 |
Q |
| |
|
|||||||||||| || |||| |||||| | || ||||||||||| |||||||||||||||| |
|
|
| T |
2794403 |
gatagtagcatcaatcttggtaagcaaagttaacatattcattcagatgaagtggttttgat |
2794342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 2810169 - 2810124
Alignment:
| Q |
93 |
agagcgaagtgtctaactttgaatttttaaataaatagttggtgag |
138 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||| |||||| |
|
|
| T |
2810169 |
agagcgaagtgtatgactttgaatttataaataaatagtcggtgag |
2810124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 11114781 - 11114891
Alignment:
| Q |
394 |
tgaatggagtccagatataggtcttggttacaaggttttgaatcaaagcttcctgaaccaaattataaaacac--caaatgacaaa--taaaacagaaaa |
489 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
11114781 |
tgaatggaatccagaaataggtcttgattacaaggttttgaatcgaagtttccacaaccaaattataaaacaccacaaatgacaaaactaaaattgaaaa |
11114880 |
T |
|
| Q |
490 |
gccaaagtcac |
500 |
Q |
| |
|
||||||||||| |
|
|
| T |
11114881 |
gccaaagtcac |
11114891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 2880 - 2957
Alignment:
| Q |
302 |
attattacaagggttgaaggaaagctcccaccaatcttaaactctagaaatggaaaaagtaggaaagtaatgtcaaaa |
379 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||||||| | | | ||||||||||| |||||||| ||| |||||| |
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|
| T |
2880 |
attattacaaggattgaataaaatctcccaccaatcttaaccgccacaaatggaaaaaataggaaagaaatatcaaaa |
2957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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