View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_22 (Length: 534)

Name: NF15302_low_22
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_22
NF15302_low_22
[»] chr4 (1 HSPs)
chr4 (7-519)||(25793173-25793685)
[»] chr3 (14 HSPs)
chr3 (47-246)||(10212816-10213001)
chr3 (29-246)||(10133715-10133918)
chr3 (29-246)||(10101874-10102078)
chr3 (125-247)||(10365757-10365879)
chr3 (432-519)||(10377968-10378055)
chr3 (433-519)||(10075174-10075260)
chr3 (157-246)||(10136450-10136539)
chr3 (134-243)||(10378208-10378317)
chr3 (433-519)||(10136729-10136815)
chr3 (456-513)||(10365502-10365559)
chr3 (433-519)||(10134094-10134180)
chr3 (29-90)||(10074981-10075042)
chr3 (54-103)||(10136332-10136381)
chr3 (188-224)||(10075062-10075098)
[»] scaffold0045 (3 HSPs)
scaffold0045 (433-499)||(85807-85873)
scaffold0045 (190-246)||(84896-84952)
scaffold0045 (28-85)||(84690-84747)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Original strand, 25793173 - 25793685
Alignment:
Q  7 gattatactttttctttagggggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25793173 gattatactttttctttagggggttttctggtaagtagtagtgaaacaatatagctattgtcatattaataaacttattcatgtcatgaacaagccttca 25793272  T
Q  107 tatatttgactggatatatattcttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcaca 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793273 tatatttgactggatatatattcttgatcattttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcaca 25793372  T
Q  207 ctggaaagatggttctgcttctagttgaagcaattggtaaatttatcatttttcatacataatctgaccactaggaacnnnnnnntattatagagtttct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||    
T  25793373 ctggaaagatggttctgcttctagttgaagcaattggtaaatttatcatttttcatacataatctgaccactaggaacaaaaaaatattaaagagtttct 25793472  T
Q  307 tgaaacggccgaaaatttagtaacttgcagtccttcaaaatcatgatacggagggagtataatgcttaaatttttgtcccattttctgataatagtttac 406  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793473 tgaaatggccgaaaatttagtaacttgcagtccttccaaatcatgagatggagggagtataatgcttaaatttttgtcccattttctgataatagtttac 25793572  T
Q  407 tgcttccatttagtctttcttgaattcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793573 tgcttccatttagtctttcttgaattcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggc 25793672  T
Q  507 ttatatggattgt 519  Q
    |||||||||||||    
T  25793673 ttatatggattgt 25793685  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 10212816 - 10213001
Alignment:
Q  47 gtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatattcttgatcattttagggtt 146  Q
    |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||     |||||||||||| |    
T  10212816 gtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat-----atcattttagggct 10212910  T
Q  147 gtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 246  Q
    |||||||         ||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||| || ||||||||||||||    
T  10212911 gtgttta---------agcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaa 10213001  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 10133715 - 10133918
Alignment:
Q  29 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatatt 128  Q
    |||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||     
T  10133715 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat- 10133813  T
Q  129 cttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttct 228  Q
        || ||||||||| |||||||          ||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||| |||    
T  10133814 ----ataattttagggctgtgttt---------tagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtct 10133900  T
Q  229 agttgaagcaattggtaa 246  Q
     || ||||||||||||||    
T  10133901 ggtcgaagcaattggtaa 10133918  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 10101874 - 10102078
Alignment:
Q  29 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatatt 128  Q
    |||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||     
T  10101874 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat- 10101972  T
Q  129 cttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttct 228  Q
        |||||||||||| |||||        |  |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||     
T  10101973 ----atcattttagggctgtgt--------tctaagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctca 10102060  T
Q  229 agttgaagcaattggtaa 246  Q
     || || |||||||||||    
T  10102061 ggtcgacgcaattggtaa 10102078  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 10365879 - 10365757
Alignment:
Q  125 tattcttgatcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgc 224  Q
    ||||| || |||||||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |    
T  10365879 tattcatgctcattttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttctac 10365780  T
Q  225 ttctagttgaagcaattggtaaa 247  Q
      || ||||||||| ||||||||    
T  10365779 gcctggttgaagcagttggtaaa 10365757  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 432 - 519
Target Start/End: Complemental strand, 10378055 - 10377968
Alignment:
Q  432 tcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgt 519  Q
    ||||||||||  ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10378055 tcaataaaataaatgaatcctattgctgcagatgtttatcttgctggtactgttatgttgatttttggtttgggcttatatggattgt 10377968  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 433 - 519
Target Start/End: Original strand, 10075174 - 10075260
Alignment:
Q  433 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgt 519  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||    
T  10075174 caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtactgttatgttgatttttataatgggtttatatggattgt 10075260  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 10136450 - 10136539
Alignment:
Q  157 tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 246  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |  || |||||||||||||||||    
T  10136450 tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaa 10136539  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 10378317 - 10378208
Alignment:
Q  134 tcattttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttg 233  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| |   | ||||    
T  10378317 tcattttagggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttg 10378218  T
Q  234 aagcaattgg 243  Q
    ||||||||||    
T  10378217 aagcaattgg 10378208  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 433 - 519
Target Start/End: Original strand, 10136729 - 10136815
Alignment:
Q  433 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgt 519  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |  ||||||||||||    
T  10136729 caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtaccgttatgttgatttttggaatgcgtatatatggattgt 10136815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 10365559 - 10365502
Alignment:
Q  456 gctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10365559 gctgcagatgtttatcttgctggtactgttatgttgatttttggtatgggcttatatg 10365502  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 519
Target Start/End: Original strand, 10134094 - 10134180
Alignment:
Q  433 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgt 519  Q
    |||||||||  |||| ||||  |||||||||||||||||||||||||||  ||||||||||||| || |||  ||| ||||||||||    
T  10134094 caataaaataaatgagtcttgttgctgcagatgtttatcttgctggtaccattatgttgattttcggaatgttcttttatggattgt 10134180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 10074981 - 10075042
Alignment:
Q  29 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgt 90  Q
    |||||||| |||||| | |||||| |||| ||||| | ||||||||||||||||||||||||    
T  10074981 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgt 10075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 10136332 - 10136381
Alignment:
Q  54 aatatagctattttcatattaataaacttattcatgtcatgaacaagcct 103  Q
    |||| ||||| | |||||||||||||||||||||||||||||| ||||||    
T  10136332 aatacagctagtgtcatattaataaacttattcatgtcatgaataagcct 10136381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 10075062 - 10075098
Alignment:
Q  188 tgtgtcaaaggagttcacactggaaagatggttctgc 224  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10075062 tgtgtcaaaggagttcacactggaaatatggttctgc 10075098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 85807 - 85873
Alignment:
Q  433 caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttgg 499  Q
    |||||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  85807 caataaaataaatgaatcttgctgctgcaaatgtttatcttgctggtaccgttatgttgatttttgg 85873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 84896 - 84952
Alignment:
Q  190 tgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa 246  Q
    ||||||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  84896 tgtcaaaggagttcacactggaaagatggttctgaggctggttgaagcaattggtaa 84952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 84690 - 84747
Alignment:
Q  28 ggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttatt 85  Q
    |||||||| ||||||| |||||||| |||| ||||| | |||||||||||||||||||    
T  84690 ggttttctcgtaagtattagtgaaataatagagctagtgtcatattaataaacttatt 84747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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