View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_23 (Length: 533)
Name: NF15302_low_23
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 5178053 - 5177537
Alignment:
| Q |
1 |
gacagtaactaatatgtaattaatcatgatctcatgataattatagttggaaaattatcaaaaggaacttgaggaaatgaagaaaatgactagactagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178053 |
gacagtaactaatatgtaattaatcatgatctcatgataattatagttggaaaattatcaaaaggaacttgaggaaatgaagaaaatgactagactagaa |
5177954 |
T |
|
| Q |
101 |
tacgttgctcatttaagaaggtacaaatatttgcatctcaatcattatgcagttgaaaaccatatgttaacaatatacataaccatataatttaactttg |
200 |
Q |
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| T |
5177953 |
tacgttgctcatttaagaaggtacaaatatttgcatctcaatcattatgcagttgaaaaccatatgttaacaatatacataaccatataatttaactttg |
5177854 |
T |
|
| Q |
201 |
taaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggtgagtctaacatcacatgcattgcactaatttaatttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5177853 |
taaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggtgagtctaacatcacatgcattgcactaatttaa-ttta |
5177755 |
T |
|
| Q |
301 |
atatatgatttatatatgaaaaataaaattggctctgattattatctttgtagcagacaccatcaacatggaagatggcaagctcgaatagggagagttg |
400 |
Q |
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| T |
5177754 |
atatatgatttatatatgaaaaataaaattggctctgattattatctttgtagcagacatcatcaacatggaagatggcaagctcgaatagggagagttg |
5177655 |
T |
|
| Q |
401 |
ctggaaataaagatctctatcttggaactttcagtgagtatactctcacatttttggttattctttcttttgtgattgtgaccaatatatttgagaaatg |
500 |
Q |
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| T |
5177654 |
ctggaaataaagatctctatcttggaactttcagtgagtatactctcacatttttggttattctttcttttgtgattgtaaccaatatatttgagaaatg |
5177555 |
T |
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| Q |
501 |
atatttttggttattcat |
518 |
Q |
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| T |
5177554 |
atatttttggttattcat |
5177537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 40190506 - 40190594
Alignment:
| Q |
351 |
tagcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagt |
439 |
Q |
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| T |
40190506 |
tagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagtgagt |
40190594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 40190198 - 40190276
Alignment:
| Q |
45 |
agttggaaaattatcaaaaggaacttgaggaaatgaagaaaatgactagactagaatacgttgctcatttaagaaggta |
123 |
Q |
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| T |
40190198 |
agttggaaaattatcaaaatcaacttgaggaaatgaagaatatgacaagacaggaatatgttgctcatttaagaaggta |
40190276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 40190344 - 40190401
Alignment:
| Q |
205 |
atcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggt |
262 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
40190344 |
atcagaaaaagcagtggattctcaagaggggcatccatgtacagaggagtaacaaggt |
40190401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 24562180 - 24562109
Alignment:
| Q |
364 |
caacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
435 |
Q |
| |
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|||||||||||||||||||| | || || |||||||| |||||||||||||| || | |||||||||||| |
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| T |
24562180 |
caacatggaagatggcaagcaaggattggcagagttgcaggaaataaagatctatacttgggaactttcagt |
24562109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 30618771 - 30618689
Alignment:
| Q |
353 |
gcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
435 |
Q |
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||||||| ||||||||||| |||||||||||| | || || |||||||| || || ||||||||||| || |||||||||||| |
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| T |
30618771 |
gcagacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaaagatctctacctaggaactttcagt |
30618689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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