View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_25 (Length: 517)

Name: NF15302_low_25
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_25
NF15302_low_25
[»] chr5 (3 HSPs)
chr5 (1-500)||(5015519-5016021)
chr5 (69-119)||(3156552-3156603)
chr5 (72-102)||(133575-133605)
[»] chr3 (2 HSPs)
chr3 (78-119)||(49088779-49088820)
chr3 (69-104)||(19126685-19126720)
[»] chr7 (4 HSPs)
chr7 (69-119)||(8261435-8261486)
chr7 (70-104)||(14623493-14623527)
chr7 (69-117)||(7908611-7908660)
chr7 (64-104)||(30397082-30397122)
[»] chr1 (2 HSPs)
chr1 (69-118)||(2613740-2613790)
chr1 (66-104)||(40735013-40735051)
[»] chr8 (1 HSPs)
chr8 (78-121)||(13958838-13958882)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 5016021 - 5015519
Alignment:
Q  1 ttagcgtccttgtgagtaaaatatcattatccacataagcagtaaaatatcatttatcaattaatttagtatggacgatgcataaaatatgtaaggtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  5016021 ttagcgtccttgtgagtaaaatatcattatccacataagcagtaaaatatcatttatcaattaatttagtatggacgatgcataaaataggtaagatttg 5015922  T
Q  101 gggt-cgaatcccgaccaccgcnnnnnnngg-caacaaattagcctctcaaatgtgtataaaatgtaccattatccactctccatttgcagcctcacaat 198  Q
    |||| ||||| |||||||||||        | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5015921 gggttcgaattccgaccaccgcaaaaaaaagacaacaaattagcctctcaaatgtttataaaatgtaccattatccactctccatttgcagcctcacaat 5015822  T
Q  199 gcttcataagcacttctccaagtgtagctagggaagtatcctagtcaagctttaagaacatctgcacgaggtaaataatgtgatttcagacatccagaga 298  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5015821 gcttcataagcacttttccaagtgtagctaggtaagtatcctagtcaagctttaagaacatcagcacgaggtaaataatgtgatttcagacatccagaga 5015722  T
Q  299 gcatagaatcaagtttatataaaatgagccacccatgtatggcgagcaacaccgtgtgaaaggctttgatatttctaaacctcattcctcatatacttta 398  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  5015721 gcatagaatcaagtttatataaaatgagccacccaagtatggcgagcaacaccgtgtgaaagactttgatatttctaaacctcattcctcatatacgtta 5015622  T
Q  399 aggtttacaacatttgtttcagttgagctagcgt-attttattgtaactataaccacatcaaaattgctttatcattgctacaatatcatcaaataatca 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5015621 aggtttacaacatttgtttcagttgagctagcgtaattttattgtaactataaccacatcaaaattgctttatcattgcttcaatatcatcaaataatca 5015522  T
Q  498 tat 500  Q
    |||    
T  5015521 tat 5015519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 3156552 - 3156603
Alignment:
Q  69 gtatggacgatgcataaaatatgtaaggtttgggg-tcgaatcccgaccacc 119  Q
    |||||||  |||||||||||||||||| ||||||| ||||||||||||||||    
T  3156552 gtatggataatgcataaaatatgtaagatttggggttcgaatcccgaccacc 3156603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 133605 - 133575
Alignment:
Q  72 tggacgatgcataaaatatgtaaggtttggg 102  Q
    |||||||||||||||||||||||||||||||    
T  133605 tggacgatgcataaaatatgtaaggtttggg 133575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 49088779 - 49088820
Alignment:
Q  78 atgcataaaatatgtaaggtttggggtcgaatcccgaccacc 119  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  49088779 atgcataaaatatgtaaggtttgagttcgaatcccgaccacc 49088820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 19126720 - 19126685
Alignment:
Q  69 gtatggacgatgcataaaatatgtaaggtttggggt 104  Q
    |||||||| |||||||||||||||||||||||||||    
T  19126720 gtatggacaatgcataaaatatgtaaggtttggggt 19126685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 8261486 - 8261435
Alignment:
Q  69 gtatggacgatgcataaaatatgtaaggtttgggg-tcgaatcccgaccacc 119  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||| |||||    
T  8261486 gtatagacaatgcataaaatatgtaaggtttggggttcgaatcccggccacc 8261435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 14623527 - 14623493
Alignment:
Q  70 tatggacgatgcataaaatatgtaaggtttggggt 104  Q
    ||||||| |||||||||||||||||||||||||||    
T  14623527 tatggacaatgcataaaatatgtaaggtttggggt 14623493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 7908611 - 7908660
Alignment:
Q  69 gtatggacgatgcataaaatatgtaaggtttgggg-tcgaatcccgacca 117  Q
    |||||||| ||||||||||||||||||||| |||| ||||| ||||||||    
T  7908611 gtatggacaatgcataaaatatgtaaggttcggggttcgaaccccgacca 7908660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 30397082 - 30397122
Alignment:
Q  64 atttagtatggacgatgcataaaatatgtaaggtttggggt 104  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  30397082 atttggtatggacaatgcataaaatatgtaaggttcggggt 30397122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2613740 - 2613790
Alignment:
Q  69 gtatggacgatgcataaaatatgtaaggtttgggg-tcgaatcccgaccac 118  Q
    |||||||| ||||||||||||||||||||| |||| ||||| |||||||||    
T  2613740 gtatggacaatgcataaaatatgtaaggttcggggttcgaaccccgaccac 2613790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 40735051 - 40735013
Alignment:
Q  66 ttagtatggacgatgcataaaatatgtaaggtttggggt 104  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  40735051 ttagtatggacaatgcataaaatatgtaaggttcggggt 40735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 13958838 - 13958882
Alignment:
Q  78 atgcataaaatatgtaaggtttgggg-tcgaatcccgaccaccgc 121  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||    
T  13958838 atgcataatatatgtaaggtttggggttcgaatcccgaacaccgc 13958882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University