View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_26 (Length: 508)

Name: NF15302_low_26
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_26
NF15302_low_26
[»] chr4 (4 HSPs)
chr4 (15-125)||(5847066-5847176)
chr4 (15-61)||(5885203-5885249)
chr4 (415-472)||(38844262-38844319)
chr4 (408-472)||(31307160-31307224)
[»] chr8 (2 HSPs)
chr8 (93-159)||(23268755-23268823)
chr8 (15-59)||(23268687-23268731)
[»] chr2 (4 HSPs)
chr2 (406-472)||(18105456-18105522)
chr2 (408-472)||(5394380-5394444)
chr2 (408-472)||(12133324-12133388)
chr2 (408-472)||(37568821-37568885)
[»] chr7 (1 HSPs)
chr7 (408-472)||(29059788-29059852)
[»] chr5 (1 HSPs)
chr5 (408-472)||(10591910-10591974)
[»] chr3 (1 HSPs)
chr3 (408-472)||(14352537-14352601)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 5847176 - 5847066
Alignment:
Q  15 aacagcacaaatggtttgttttataaaggttcagaaatatgcatacatacacaatcattcacgtgttttgcattgtggaaaagtttttagagaaatttcg 114  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847176 aacagcacaaatggtttgtgttataaagtttcagaaatatgcatacatacacaatcattcacgtgttttgcattgtggaaaagtttttagagaaatttcg 5847077  T
Q  115 tggaacatgac 125  Q
    |||||||||||    
T  5847076 tggaacatgac 5847066  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 5885249 - 5885203
Alignment:
Q  15 aacagcacaaatggtttgttttataaaggttcagaaatatgcataca 61  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  5885249 aacaacacaaatggtttgttttataaagtttcagaaatatgcataca 5885203  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 38844319 - 38844262
Alignment:
Q  415 cttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    ||||||||||| ||||||||| |||||||| ||||||||| | ||  |||||||||||    
T  38844319 cttaaatgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatcca 38844262  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 31307224 - 31307160
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    ||||||||||| |||||| |||||| || |||||||| ||||||||| |  | ||||||||||||    
T  31307224 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatcca 31307160  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 23268755 - 23268823
Alignment:
Q  93 aaaagtttttagagaaatttcgtggaacatga-cacattttt-ctatcaggtaatattaacgatgactt 159  Q
    |||||| || |||||||||||||||||||||| || |||||| ||||||||| ||||||| ||||||||    
T  23268755 aaaagtcttgagagaaatttcgtggaacatgagcatatttttgctatcaggtgatattaatgatgactt 23268823  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 23268687 - 23268731
Alignment:
Q  15 aacagcacaaatggtttgttttataaaggttcagaaatatgcata 59  Q
    ||||| |||||||||||||||| || || ||||||||||||||||    
T  23268687 aacagaacaaatggtttgttttgtacagtttcagaaatatgcata 23268731  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 18105522 - 18105456
Alignment:
Q  406 ctaagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    |||||||| |||| |||||| ||||||||| |||||||| ||||||||| |  | ||||||||||||    
T  18105522 ctaagagcgcttatatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatcca 18105456  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 5394380 - 5394444
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    |||||| |||| |||||| ||||||||| |||||||| ||||||||| |  | ||||||||||||    
T  5394380 aagagcgcttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatcca 5394444  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 12133388 - 12133324
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    |||||| |||| |||||| ||||||||| |||||||| |||| |||| | || ||||||||||||    
T  12133388 aagagcgcttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatcca 12133324  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 37568885 - 37568821
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    ||||||||||| |||||| |||||| || |||||||| ||||||||| |  | ||||||||||||    
T  37568885 aagagcacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatcca 37568821  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 29059788 - 29059852
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    ||||||||||| |||||| |||||| || |||||||| ||||||||| |  | ||||||||||||    
T  29059788 aagagcacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatcca 29059852  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 10591910 - 10591974
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    ||||||||||| |||||| |||||| || |||||||| ||||||||| |  | ||||||||||||    
T  10591910 aagagcacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatcca 10591974  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 14352537 - 14352601
Alignment:
Q  408 aagagcacttaaatgagacggaacgagtatcttctagtttaaccaagattattggttcgaatcca 472  Q
    |||||| |||| |||||| ||||| ||| |||||||| |||||||||||  | ||||||||||||    
T  14352537 aagagcgcttagatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatcca 14352601  T

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