View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_27 (Length: 502)
Name: NF15302_low_27
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 52513247 - 52513106
Alignment:
| Q |
15 |
taatactcatcttgggattttcaaccaacacctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaatttt |
114 |
Q |
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| T |
52513247 |
taatactcatcttgggattttcaaccaacacctttagcttgatcctcttcatttttccttttaattaacaacttaattagtatatgcaattataaa-ttt |
52513149 |
T |
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| Q |
115 |
tatcattatggaatctacaaatctccatcatctccaagaccaa |
157 |
Q |
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| T |
52513148 |
tatcattatggaatctacaaatctccatcatctccaagaccaa |
52513106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 182 - 335
Target Start/End: Complemental strand, 52513087 - 52512934
Alignment:
| Q |
182 |
gtttcttctttatccagtaccacatcctatagagttgttggaggaaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagtttt |
281 |
Q |
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| T |
52513087 |
gtttcttctttatccagtaccccatcctatacagttggaggaaccaccaccacccactcttggaccccaaacatcactttgtaagtcacttcttagtttt |
52512988 |
T |
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| Q |
282 |
aattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc |
335 |
Q |
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| T |
52512987 |
aattatttcctatatatatgcatgaagctaattttttcatttcttctcaatctc |
52512934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 355 - 485
Target Start/End: Complemental strand, 52512900 - 52512770
Alignment:
| Q |
355 |
atgtggaactctctatcatgtagaattaacgagatgatcatttattgttgtaataattctataaatgttttctgtgtttgagaaatatactatacttaat |
454 |
Q |
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| T |
52512900 |
atgtggaactctctatcctgtagaattaactagatgatcatttattgttgtaataattctataaattttttctgtgtttgtgaaatatactatacttata |
52512801 |
T |
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| Q |
455 |
tatatatattttgactagactagggtttgat |
485 |
Q |
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| T |
52512800 |
tatatatattttgactaaactagggtttgat |
52512770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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