View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_28 (Length: 486)
Name: NF15302_low_28
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 217 - 463
Target Start/End: Complemental strand, 8133107 - 8132858
Alignment:
| Q |
217 |
tctactcataatttgaatcagaataacgtatactgcaacaaaaggcagaatattaca-----attcaattaaatccacaaaacatgtacacaatgtgaca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8133107 |
tctactcataatttgaatcagaataacgtatactgcaacaaaaggcagaatattacatactaattcaattaaatccacaaaacatgtacagaatgtgaca |
8133008 |
T |
|
| Q |
312 |
tgactcagatacgaacaccaaacacctaatataatagacacgtcaataccgataatcaagtgtgtcggtgttgtgtgtcagacacatgtcgaacacaaga |
411 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
8133007 |
tgactcagatacgaacaccaaacaccgaatataatagacacgtcaatactgataatcaagtgtgtcagtgt--tgtgtcagacacatgtcgaacacaaga |
8132910 |
T |
|
| Q |
412 |
gacataaattgtttgaaagagagatcagaaattggaagaggttgtcggtcac |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8132909 |
gacataaattgtttgaaagagagatcagaaattggaagaggttgtcggtcac |
8132858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8133323 - 8133216
Alignment:
| Q |
1 |
catagatatattacaagtttctgcttagtgaataagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8133323 |
catagatatattacaagtttctgcttagtgaataagttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattctt |
8133224 |
T |
|
| Q |
101 |
cactgcag |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
8133223 |
cactgcag |
8133216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 8151262 - 8151172
Alignment:
| Q |
4 |
agatatattacaagtttctgcttagtgaataag--ttgccattctcattgatcataaaaatctctagagtctaacatgtgaattttcttct |
92 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||| |||||||||||||||| |||||||||| ||||| | |||||||||||||||| |
|
|
| T |
8151262 |
agatatattacaagtttttgctttgcgaataagaattgacattctcattgatcatgaaaatctctaaagtctgagatgtgaattttcttct |
8151172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 2806695 - 2806646
Alignment:
| Q |
417 |
aaattgtttgaaagagagatcagaaattggaagaggttgtcggtcacagt |
466 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2806695 |
aaattgtttgaaacagagatcagaaattggaaaaggttgtcggtcacagt |
2806646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 2806809 - 2806762
Alignment:
| Q |
221 |
ctcataatttgaatcagaataacgtatactgcaacaaaaggcagaatat |
269 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2806809 |
ctcataatttgaatcagaatagcgtatactgcaac-aaaggcagaatat |
2806762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 2806938 - 2806877
Alignment:
| Q |
41 |
cattctcattgatcataaaaatctctagagtctaacatgtgaattttcttcttcattcatcac |
103 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||| ||||||||| |
|
|
| T |
2806938 |
cattctcattgattataaaaatctctgaagtctgacatgtgaaattt-ttcttaattcatcac |
2806877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 43068758 - 43068717
Alignment:
| Q |
421 |
tgtttgaaagagagatcagaaattggaagaggttgtcggtca |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43068758 |
tgtttgaaagagagatcagaaattggaagaggttgtctgtca |
43068717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University