View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_3 (Length: 728)
Name: NF15302_low_3
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 303 - 572
Target Start/End: Original strand, 9937038 - 9937309
Alignment:
| Q |
303 |
acaattttgatcttcttattttcactcactcacataattggtccctcattttaaattcatccagttttaatccctctttcatagttttaaattgatgttc |
402 |
Q |
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| T |
9937038 |
acaattttgatcttcttattttcactcactcacagaattggtccctcattttaaattcatccagttttaatccctctttcatagttttaaattgatgttt |
9937137 |
T |
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| Q |
403 |
tacaggnnnnnnnaatataatttcatggttgttggtcattcatgttcatcatattgtatgactcgtcatttaaaatac--cacatcactattctttagtc |
500 |
Q |
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| T |
9937138 |
tagaggttttttttatataatttcatggttgttggtcattccagttcatcatattgtatgactcgtcatttaaaatatatcacatcactattctttagtt |
9937237 |
T |
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| Q |
501 |
caaaaataggataaatagaccaaaattgagtgattcggaaaaagtagaggcaattctgtgagtgagtgagtg |
572 |
Q |
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| T |
9937238 |
caaaaataggataattagaccaaaattgagtgattcagaaaaagtagaagcaattctgtgagtgagtgagtg |
9937309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 9936824 - 9936914
Alignment:
| Q |
226 |
atcatgaggtaccgacatctgagctatcaaacccttaacaatcaattgcatcacactcttaaatattaggcttaatcacaattttgatctt |
316 |
Q |
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| T |
9936824 |
atcatgaggtaccgacatctgagctatcaaacccttaacaatcaattgcatcacactcttaaatattaggcttaatcacaattttgatctt |
9936914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 9936669 - 9936739
Alignment:
| Q |
25 |
acttttaaattaccgttttgcttaggtctcttacaaattgtatttttgtttttgtttctctttgagggttttg |
97 |
Q |
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| T |
9936669 |
acttctaaattaccgttttgcttaggtcttttgct--ttgtatttttatttttgtttctctttgagggttttg |
9936739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 19065583 - 19065528
Alignment:
| Q |
294 |
ggcttaatcacaattttgatcttcttattttcactcactcacataattggtccctc |
349 |
Q |
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| T |
19065583 |
ggcttaattacagttttgatcatcatattttcactcactcatataatttgtccctc |
19065528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 19113473 - 19113418
Alignment:
| Q |
294 |
ggcttaatcacaattttgatcttcttattttcactcactcacataattggtccctc |
349 |
Q |
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| T |
19113473 |
ggcttaattacagttttgatcatcatattttcactcactcatataatttgtccctc |
19113418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 15540444 - 15540493
Alignment:
| Q |
286 |
aaatattaggcttaatcacaattttgatcttcttattttcactcactcac |
335 |
Q |
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| T |
15540444 |
aaatattaagcttaattacaattttggtttttttattttcactcactcac |
15540493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 17427682 - 17427731
Alignment:
| Q |
308 |
tttgatcttcttattttcactcactcacataattggtccctcattttaaa |
357 |
Q |
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| T |
17427682 |
tttgatcctcttattttcactcattcaaataattggtccccaattttaaa |
17427731 |
T |
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