View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_34 (Length: 442)
Name: NF15302_low_34
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 48815680 - 48816081
Alignment:
| Q |
18 |
aaaggggtaagccacaacgtctgtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaaggaag |
117 |
Q |
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| T |
48815680 |
aaaggggtaagccacaacgtctgtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaaggaag |
48815779 |
T |
|
| Q |
118 |
catccacgttacacttaattcttcctactggccggtggtgacnnnnnnnttgacttgttgtttgcaaacattaattcgcctagtcatgattggcacactc |
217 |
Q |
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| T |
48815780 |
catccacgttacacttaattcttcctactga----tggtgacaaaaaaattgtcttgttgtttgcaaacattaattcgcctagtcatgattggcacactc |
48815875 |
T |
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| Q |
218 |
taaaatatgagcggtcgtgtatatataacatgttgccaaatgtttgaattattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttgg |
317 |
Q |
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| T |
48815876 |
taaaatatgagcggtcgtgtatatataacatgttgccaaatgtttgaattattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttgg |
48815975 |
T |
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| Q |
318 |
tttgaggcaaccattgcaataaaagaaaaatcaatgctgcagcgttatattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgcca |
417 |
Q |
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| T |
48815976 |
tttgaggcaacctttgcaataaaagaaaaatcaatgttgcagcgttatattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgcca |
48816075 |
T |
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| Q |
418 |
cacttg |
423 |
Q |
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| T |
48816076 |
cacttg |
48816081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21623740 - 21623610
Alignment:
| Q |
18 |
aaaggggtaagccac----aacgtctgtgctaacacatacctaccctcatcatcctaaatacacattcttatactgactttgttcgaagaagagaggaag |
113 |
Q |
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||||||||||||||| ||||| ||||| ||||| |||| |||||||||||| |||||||| || ||||| |||||||| ||||||| | |||| |
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| T |
21623740 |
aaaggggtaagccacgcgcaacgttcgtgctgacacaaacctgccctcatcatcccgaatacacactcctatacctactttgtt-gaagaagcggagaag |
21623642 |
T |
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| Q |
114 |
gaagcatccacgttacacttaattcttcctac |
145 |
Q |
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| T |
21623641 |
gaagcatccacgttatacttaagtcttcctac |
21623610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 423
Target Start/End: Complemental strand, 21623397 - 21623245
Alignment:
| Q |
271 |
gtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgaggcaaccattgcaataaaagaaaaatcaatgctgcagcgttatattct |
370 |
Q |
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| T |
21623397 |
gtgcttccaaattctccataggattgtggcaaattatgtaaccttggttttaggaaaacgctgcaataagagaaaaattgatgtcgtagcgttataacct |
21623298 |
T |
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| Q |
371 |
tgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttg |
423 |
Q |
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|| ||| |||| ||||| |||||| ||||| | ||||||||||||||||||| |
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| T |
21623297 |
tgatgtaaagttgcagttacatcttgcaaaagaccaccatttcgccacacttg |
21623245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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