View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_35 (Length: 442)
Name: NF15302_low_35
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 31638623 - 31638260
Alignment:
| Q |
9 |
aatataatagttaattcatatttcctttggggcgtggttttaaaatgccaaatacttggaatactatttgctaattgcaggtgatgaaggtggcatggct |
108 |
Q |
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| T |
31638623 |
aatataatagttaattcatattttctttgacttgtggttttaaaatgtcaaatacttggaatactatttgctaatttcaggtgatgaaggtggcatggct |
31638524 |
T |
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| Q |
109 |
cattagttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatctctagtaagagtatagttttggaattaatag |
208 |
Q |
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| T |
31638523 |
cattagttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatcactagtaagagtatagttttggaattaatag |
31638424 |
T |
|
| Q |
209 |
gtttttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtgaatcaatggt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31638423 |
gtttttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtgaatcaatggt |
31638324 |
T |
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| Q |
309 |
gctactaaagacaggtaattcttcatatagtttttcttgtattttcactggatcttagttacta |
372 |
Q |
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| T |
31638323 |
gctactaaagacaggtaattcttcatatagtttttcttgtattttcactggatcttagttacta |
31638260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 31671094 - 31671156
Alignment:
| Q |
42 |
gtggttttaaaatgccaaatacttggaatactatttgctaattgcaggtgatgaaggtggcat |
104 |
Q |
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| T |
31671094 |
gtggatttaaaatgccaaatacttggattactatttgctaattgcaagtgataaaggtggcat |
31671156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 31671429 - 31671532
Alignment:
| Q |
272 |
caacagcgatgtatctgcttcaacgtgaatcaatggtgctactaaagac--aggtaattcttcata-tagtttttcttgtattttcactggatcttagtt |
368 |
Q |
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|||||||||||| ||| |||||||||||||||| ||| ||||||| || ||||||||| | | | |||||||| || | |||| |||||||||||||| |
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| T |
31671429 |
caacagcgatgtctctccttcaacgtgaatcaaaggtaatactaaatacataggtaattcattacattagtttttgttatgttttgactggatcttagtt |
31671528 |
T |
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| Q |
369 |
acta |
372 |
Q |
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|||| |
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| T |
31671529 |
acta |
31671532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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