View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_36 (Length: 437)
Name: NF15302_low_36
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 49850291 - 49850700
Alignment:
| Q |
16 |
gttatttagttttttcgcttgacataagtacttgattgttacgtaattaagaagatattattgagtgaatgatataataagtagctacgtgaa------- |
108 |
Q |
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| T |
49850291 |
gttatttagttttt-cgcttgacataagtacttgattgttacgtaattaagaagatattattgagtgaatgatataataagtagctacctgaaaggtcct |
49850389 |
T |
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| Q |
109 |
---cagaagaagacggtgttaagagttgaaacaaattgatatggaccccggtttatactgtttataaagtattagtattactgtaagtatataagaaacg |
205 |
Q |
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| T |
49850390 |
gaacagaagaagacggtgttaagagttgaaacaaattgatatggaccccggtttatactgtttataa-gtattagtattactgtaagtatataagaaacg |
49850488 |
T |
|
| Q |
206 |
tgtttgactgaagaaaactaattaaatgaaaactacacaacaaagtagaaatacaatgtaagggagctagcaggttgtattttag-----aaataaaata |
300 |
Q |
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| T |
49850489 |
tgtttgactgaagaaaactaattaaatgaaaactacacaacaaagtagaaatacaatgtaagggagctagcaggttgtattttagaaataaaataaaata |
49850588 |
T |
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| Q |
301 |
taatgttggtaagtaaagtagggacacttttcgttgtctcactctcactcaccagctgcaatgctttgtttttctccatcaaggtcataactcgatcgag |
400 |
Q |
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| T |
49850589 |
taatgttggtaagtaaagtagggacacttttcgttgtctcact----ctcaccagctgc-atgctttgtttttctccatcaaggtcataactcgat---- |
49850679 |
T |
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| Q |
401 |
cgagcaagtacagatatattc |
421 |
Q |
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| T |
49850680 |
cgagcaagtacagatatattc |
49850700 |
T |
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