View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_37 (Length: 434)
Name: NF15302_low_37
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 213 - 416
Target Start/End: Original strand, 50521669 - 50521872
Alignment:
| Q |
213 |
ggaaggctctagggaagaagactcccgaggcgtcactccgaagcagcaagatgaagtattctagaggagctgtgtggatgacgaaatcagcattggatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50521669 |
ggaaggctctagggaagaagactcccgaggcgtcactccgaagcagcaagatgaggtcttctggaggagttgtgtggatgacgaaatcagcattggatgt |
50521768 |
T |
|
| Q |
313 |
ggcctctaactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattgtaaaattattggtagccaatatatccttaatgttctgg |
412 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50521769 |
ggcccctaactttgccatgaaatcaaaattctggttaccgtctctgagagtatgatgaaatgtaaaattattggtagccaatatatccttaatgttctgg |
50521868 |
T |
|
| Q |
413 |
atga |
416 |
Q |
| |
|
|||| |
|
|
| T |
50521869 |
atga |
50521872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 50521467 - 50521602
Alignment:
| Q |
13 |
aatatcatggatagccctacatagacatatattgtatgtttgagttcaattttaggagagataaaagtgattttaaagaaagtgcatcctcttaattaaa |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50521467 |
aatatcatggatagccctacatacacatatattgtatgtttgagttcaattttaggagagataaaagtgattttaaagaaagtgcatcctcttaattaaa |
50521566 |
T |
|
| Q |
113 |
tgtgagtttaatataaaatgatttttgtttgaatac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
50521567 |
tgtgagtttaatataaaatgatttttgtttgaatac |
50521602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 1090665 - 1090637
Alignment:
| Q |
222 |
tagggaagaagactcccgaggcgtcactc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1090665 |
tagggaagaagactcccgaggcgtcactc |
1090637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 219 - 414
Target Start/End: Complemental strand, 28874888 - 28874693
Alignment:
| Q |
219 |
ctctagggaagaagactcccgaggcgtcactccgaagcagcaagatgaagtattctagaggagctgtgtggatgacgaaatcagcattggatgtggcctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||| ||||| |||||| |||||||||||||| | |
|
|
| T |
28874888 |
ctctagggaagaagactcccgaggcgtcactccgaagcagcaagatgaggttttttggaggagctgtgtgaatgacaaaatcaacattggatgtggcccc |
28874789 |
T |
|
| Q |
319 |
taactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattgtaaaattattggtagccaatatatccttaatgttctggat |
414 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28874788 |
taactttaccatgaaatcaacacactggttaccttcttagagagtgtgatgaattgtaaaattattggtagccaatatatccttaatgttgtggat |
28874693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 216 - 410
Target Start/End: Original strand, 45124351 - 45124545
Alignment:
| Q |
216 |
aggctctagggaagaagactcccgaggcgtcactccgaagcagcaagatgaagtattctagaggagctgtgtggatgacgaaatcagcattggatgtggc |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||||||||| || || || ||||||| |||||||||||||||||| ||||||| | | |
|
|
| T |
45124351 |
aggctctagggaagaagactctcgaggcgtcacttcaaagcagcaagaggaggtcctccggaggagcagtgtggatgacgaaatcaacattggacacgac |
45124450 |
T |
|
| Q |
316 |
ctctaactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattgtaaaattattggtagccaatatatccttaatgttct |
410 |
Q |
| |
|
| |||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45124451 |
ccctaactttgccatgaaattagcactttggttaccttctctgagagtatgataaattgtaaaattattggtggccaatatatccttaatgttct |
45124545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 31788900 - 31788826
Alignment:
| Q |
318 |
ctaactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattgtaaaattattggtagcca |
392 |
Q |
| |
|
|||| |||||||| ||||| | |||||||||||||||||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
31788900 |
ctaattttgccataaaatccgcactctggttaccttctctgagaatgtgatgaattgagaaattgctggtagcca |
31788826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 19137314 - 19137258
Alignment:
| Q |
318 |
ctaactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattg |
374 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
19137314 |
ctaactttgccataaaatccacactctggttacattctctgagagtgtgatgaattg |
19137258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 20736713 - 20736657
Alignment:
| Q |
318 |
ctaactttgccatgaaatcagaactctggttaccttctctgagagtatgatgaattg |
374 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
20736713 |
ctaactttgccataaaatccacactctggttacattctctgagagtgtgatgaattg |
20736657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 373223 - 373174
Alignment:
| Q |
314 |
gcctctaactttgccatgaaatcagaactctggttaccttctctgagagt |
363 |
Q |
| |
|
|||||||||||||||||| |||| | |||||| || |||||||||||||| |
|
|
| T |
373223 |
gcctctaactttgccatgtaatccgcactctgattgccttctctgagagt |
373174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University