View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_39 (Length: 422)
Name: NF15302_low_39
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 39952112 - 39951734
Alignment:
| Q |
22 |
gttacagggagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatgga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952112 |
gttacagggagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatgga |
39952013 |
T |
|
| Q |
122 |
taaagataaacgattgaatattttcaggcaatgagtggatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39952012 |
taaagataaacgattgaatattttcaggcaatgagtagatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcacccat |
39951913 |
T |
|
| Q |
222 |
ttggagaccattcacttgacacagaccattcaagttgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951912 |
ttggagaccattcacttgacacagaccattcaagttgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttc |
39951813 |
T |
|
| Q |
322 |
ttacgaagtaaatgtttgcagttgtgcatgcatttgagcttgtgtcatgtgaaaatacatcagatacatgccagaaata |
400 |
Q |
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| T |
39951812 |
atacgaagtaaatgtttgcagttgtgcatgcatttgagcttgtgtcatgtgaaaatacatcagatacatgccagaaata |
39951734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 95 - 402
Target Start/End: Original strand, 34230589 - 34230932
Alignment:
| Q |
95 |
taacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatca----------------------tacccatta |
172 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
34230589 |
taacaacataatcagagtgcccatggataaagataaacaattgaatattttcaggcaatgagtagatcaaggccccaccagtggaaagacatacccatta |
34230688 |
T |
|
| Q |
173 |
tcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattca---------------agtt |
257 |
Q |
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|||||||||||||| || | ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || | |
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| T |
34230689 |
tcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattcagctttggttgatgcaagct |
34230788 |
T |
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| Q |
258 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgtgcatgcatttg |
357 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||||| |||||||||||| || |
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| T |
34230789 |
gtttcctttccacgtaatcccaaaa-tacctagaacaacataatgaaaaacacatgaattcctcatacgaagcaaatgtttgcaattgtgcatgcatctg |
34230887 |
T |
|
| Q |
358 |
agcttgtgtcatgtgaaaatacatcagatacatgccagaaataaa |
402 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
34230888 |
agcttgtgtcatttgaaaatacatcagatacttgccagaaataaa |
34230932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 34230449 - 34230526
Alignment:
| Q |
22 |
gttacagggagaaaaatcaacaaacataatcaagagatatttgctcaacataatttaaatctaatacatattttaaca |
99 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34230449 |
gttacagggataaaagccaacaaacataatcaagagatatttactcaacataatttaaatctaatacatattttaaca |
34230526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 30339394 - 30339345
Alignment:
| Q |
94 |
ttaacaacaaaatcagagtgcccatggataaagataaacgattgaatatt |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30339394 |
ttaacaacaaaatcagagtgcccatggataaagataaacaattgaatatt |
30339345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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