View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_42 (Length: 392)
Name: NF15302_low_42
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_42 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 34836 - 35155
Alignment:
| Q |
12 |
agccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcata |
111 |
Q |
| |
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|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34836 |
agccattatttgttacaaagtagcacatggggttgtattcctccatgtccttgggatcgaactcttcctctgaatcctcaacttcagacaccatatcata |
34935 |
T |
|
| Q |
112 |
gtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctct |
211 |
Q |
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|||||||| |||||||||| || ||| |||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||| ||||||| | | |
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| T |
34936 |
ttcagctggcaaaatggaaaccacattgcatatgacgtcgaagtccagttctgaatccataaactctgaatccaattcatcatcttcgtcaggattattt |
35035 |
T |
|
| Q |
212 |
ttgactaggggaagagactacctttatttcgctgatcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggctta |
311 |
Q |
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|||| |||||||||||||||||| | |||||||| |||||||| | ||| ||||||||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
35036 |
ttgaataggggaagagactacctctctttcgctggtcttcttcctaatttgaccattctttgattatcatttgggtcaatagttttgtcttgaaggcttg |
35135 |
T |
|
| Q |
312 |
aagcaacgccttttttggac |
331 |
Q |
| |
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||||| ||||||||||||| |
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| T |
35136 |
cagcaatgccttttttggac |
35155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 74 - 333
Target Start/End: Original strand, 22803746 - 22804004
Alignment:
| Q |
74 |
tcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataa |
173 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| | |||||| ||||| || | || ||| |||||| ||| ||||| |||||||||||||||| |
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| T |
22803746 |
tcttcctctgaatcatcgacttcagataccatatcatattaagctggcaaaattgagaccacattgcatatgaagtcgaagtctggttctgaatccataa |
22803845 |
T |
|
| Q |
174 |
aatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagagactacctttatttcgctgatcttcttcatgattcgaccattctttg |
273 |
Q |
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| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| | || |||||||| |||||||||||||||||| |
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| T |
22803846 |
actttgaacccaattcatcatcttcatcagaatcctctttgactaggggaagagacaacctttattatgttggtcttcttcttgattcgaccattctttg |
22803945 |
T |
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| Q |
274 |
accatcatttgggtcagtagttttgtcttcaaggcttaaagcaacgccttttttggacct |
333 |
Q |
| |
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|||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |
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| T |
22803946 |
accatcatttgggtcaacag-tttgtcttcaaggcttgcagcaacgccttttttggacct |
22804004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 11885215 - 11885020
Alignment:
| Q |
13 |
gccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatag |
112 |
Q |
| |
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||||| |||||||||||| || || |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11885215 |
gccattatttgttacaaagtaccatatgggtttgtattcctccatatccttgggatcgaactcttcctctgaatcctcaacttcagacaccatatcatat |
11885116 |
T |
|
| Q |
113 |
tcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcc |
208 |
Q |
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|||||||| |||||||||| | ||| |||||||||| |||||||||| ||||||||| || |||||| |||| ||||||||||||||||||||| |
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| T |
11885115 |
tcagctggcaaaatggaaacaacattgcatatgacgtcgaagtccggttttgaatccatgaactctgaatccaattcatcatcttcatcaggatcc |
11885020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 32 - 310
Target Start/End: Complemental strand, 24988117 - 24987839
Alignment:
| Q |
32 |
tagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaa |
131 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||| || ||||||||| ||||||||||| | ||||||||| |||||||| |||||||||| |
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| T |
24988117 |
tagcacatgggtttgtattcttccatgtccttgggatcgaacttttactctgaatcatcgacttcagatatcatatcatattcagctggtaaaatggaaa |
24988018 |
T |
|
| Q |
132 |
tcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctttgactaggggaagagacta |
231 |
Q |
| |
|
||| ||| ||||||| || ||||| ||||||||||| |||| ||| || || ||||||||||||| ||||||||| | ||||| ||||||||| | |
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| T |
24988017 |
ccaaattgcatatgacatcgaagtctggttctgaatctgtaaatcttgatcctaactcatcatcttcattaggatcctcctcgactaaaggaagagacaa |
24987918 |
T |
|
| Q |
232 |
cctttatttcgctgatcttcttcatgattcgaccattctttgaccatcatttgggtcagtagttttgtcttcaaggctt |
310 |
Q |
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||| | ||| || |||||||| ||||||||||||||| ||| || | ||||||||| ||| | |||||||||||| |
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| T |
24987917 |
cctctcttttattggtcttcttcttgattcgaccattctctgatcaccctttgggtcaacagtctcatcttcaaggctt |
24987839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20246835 - 20246903
Alignment:
| Q |
1 |
atcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggatt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20246835 |
atcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggatt |
20246903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22140819 - 22140887
Alignment:
| Q |
1 |
atcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggatt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22140819 |
atcatttttagagccatcatttgttacaaaatagcacatgggtttgtattcctccatgtccttgggatt |
22140887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 18218225 - 18218039
Alignment:
| Q |
26 |
acaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaa |
125 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || ||||| || | ||||||| | ||||| || |||| |
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|
| T |
18218225 |
acaaaatagcacatggctttatattcctccatgtctttgggatcgaactcttcctctgaatcatcaacttcggatatcatatcaaattcagcgggtaaaa |
18218126 |
T |
|
| Q |
126 |
tggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcctctt |
212 |
Q |
| |
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|||||| ||| ||| ||||||| | ||||| ||||||||||| | | |||| || || ||||||||||||| ||||||||||| |
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| T |
18218125 |
tggaaaccaaattgcatatgacattgaagtctggttctgaatctgaatatcctgatcctaactcatcatcttcattaggatcctctt |
18218039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 4599090 - 4599273
Alignment:
| Q |
26 |
acaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaa |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| || |||||||| | ||| ||||| || ||||| |||| |
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|
| T |
4599090 |
acaaaatagcacatgggtctgtattcctccattcccttgggatcgaactcttcctctgaatcatcaacttcagatatcatgtcatattcggctggtaaaa |
4599189 |
T |
|
| Q |
126 |
tggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaatctgaacccaaatcatcatcttcatcaggatcct |
209 |
Q |
| |
|
| ||| ||| ||| ||||||| || ||||| | || ||| || |||| |||| || || ||||||||||||| |||||||| |
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| T |
4599190 |
cgaaaaccaaattgcatatgacatcgaagtctgattttgactctgtaaatcctgatcctaactcatcatcttcattaggatcct |
4599273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 2284189 - 2284294
Alignment:
| Q |
26 |
acaaaatagcacatgggtttgtattcctccatgtccttgggattgaactcttcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaa |
125 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||| |||| || ||||| || | ||||||||| | |||||| |||| |
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|
| T |
2284189 |
acaaaatagcacatgggtttgtactcccttgtgtatttgggatcgaactcttcctctaaatcatcaacttccgatatcatatcatacttagctggtaaaa |
2284288 |
T |
|
| Q |
126 |
tggaaa |
131 |
Q |
| |
|
|||||| |
|
|
| T |
2284289 |
tggaaa |
2284294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 22034190 - 22034055
Alignment:
| Q |
77 |
tcctctgaatcctcgacttcagacaccatatcatagtcagctggaaaaatggaaatcaagttgaatatgacgtcaaagtccggttctgaatccataaaat |
176 |
Q |
| |
|
|||||||| ||||| | ||||||||||| || ||| || || ||||||||||||||| ||| | |||||||| |||| |||||||||||| | |||| |
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| T |
22034190 |
tcctctgattcctccatttcagacaccacattatattctgcatgaaaaatggaaatcacattgcaaatgacgtcgaagttaggttctgaatccttgaaat |
22034091 |
T |
|
| Q |
177 |
ctgaacccaaatcatcatcttcatcaggatcctctt |
212 |
Q |
| |
|
|| || | | ||||||||| || |||||| ||||| |
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|
| T |
22034090 |
ctaaatctatttcatcatctccaacaggattctctt |
22034055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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