View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15302_low_43 (Length: 385)

Name: NF15302_low_43
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15302_low_43
NF15302_low_43
[»] chr2 (6 HSPs)
chr2 (263-370)||(13948910-13949017)
chr2 (263-370)||(14090117-14090224)
chr2 (1-82)||(3377122-3377203)
chr2 (81-183)||(13949095-13949199)
chr2 (81-183)||(14090302-14090406)
chr2 (49-82)||(3081203-3081236)
[»] chr8 (3 HSPs)
chr8 (1-82)||(44495212-44495293)
chr8 (5-82)||(41434876-41434952)
chr8 (5-77)||(42934844-42934915)
[»] chr4 (1 HSPs)
chr4 (1-82)||(15707065-15707146)
[»] chr7 (2 HSPs)
chr7 (3-83)||(16000050-16000130)
chr7 (1-83)||(14586234-14586316)
[»] scaffold0642 (1 HSPs)
scaffold0642 (1-82)||(3810-3891)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-82)||(13722-13803)
[»] scaffold0105 (1 HSPs)
scaffold0105 (1-82)||(25178-25259)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-82)||(1848-1929)
[»] chr3 (1 HSPs)
chr3 (5-82)||(42580547-42580624)
[»] chr6 (1 HSPs)
chr6 (49-82)||(27765318-27765351)
[»] chr1 (1 HSPs)
chr1 (14-82)||(12606643-12606711)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 13949017 - 13948910
Alignment:
Q  263 gtgttcttaaatcttagttagcatgactcttgtttaaacaaagttcttaatcatttgttagtatgagtgaataacccttattaattcggtttttcattcg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||    
T  13949017 gtgttcttaaatcttagttagcatgactcttgtttaaacaaagttcttaatcatttgttagtatgagtgtataacccttatcaattcggtttgtcatccg 13948918  T
Q  363 tcattaat 370  Q
    ||||||||    
T  13948917 tcattaat 13948910  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 14090224 - 14090117
Alignment:
Q  263 gtgttcttaaatcttagttagcatgactcttgtttaaacaaagttcttaatcatttgttagtatgagtgaataacccttattaattcggtttttcattcg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||    
T  14090224 gtgttcttaaatcttagttagcatgactcttgtttaaacaaagttcttaatcatttgttagtatgagtgtataacccttatcaattcggtttgtcatccg 14090125  T
Q  363 tcattaat 370  Q
    ||||||||    
T  14090124 tcattaat 14090117  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3377203 - 3377122
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3377203 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagttcatcaagtctagctttaatagtaaaggat 3377122  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 13949199 - 13949095
Alignment:
Q  81 atgctccaaaggtatgtttgagaaattaaatgaaannnnnnn--gcatataaattatacgatgcaaattagtatttcagagacactaattaaggagataa 178  Q
    |||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  13949199 atgctccaaaggtatgtttgagaaattaaatgattttttcttttgcatataaattatacgatgcaaattagtattttagagatactagttaaggagataa 13949100  T
Q  179 atata 183  Q
    |||||    
T  13949099 atata 13949095  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 14090406 - 14090302
Alignment:
Q  81 atgctccaaaggtatgtttgagaaattaaatgaaannnnnnn--gcatataaattatacgatgcaaattagtatttcagagacactaattaaggagataa 178  Q
    |||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  14090406 atgctccaaaggtatgtttgagaaattaaatgattttttcttttgcatataaattatacgatgcaaattagtattttagagatactagttaaggagataa 14090307  T
Q  179 atata 183  Q
    |||||    
T  14090306 atata 14090302  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 3081236 - 3081203
Alignment:
Q  49 cagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||||||||||||| ||||||||||||||||||    
T  3081236 cagctcatcaagtctggctttaatagtaaaggat 3081203  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 44495293 - 44495212
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495293 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 44495212  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 41434952 - 41434876
Alignment:
Q  5 atgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||| |||||||||||||||||||  |||||||| |||| ||||||||||||||||||||| |||||||||||||||    
T  41434952 atgggattaggagggaaattagggaaagattagggttaag-tgacagctcatcaagtctagcgttaatagtaaaggat 41434876  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 42934844 - 42934915
Alignment:
Q  5 atgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaa 77  Q
    ||||| ||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||    
T  42934844 atgggattaagagggaaattagggagagattagggttaag-tgacagctcatcaagtctagcgttaatagtaa 42934915  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15707146 - 15707065
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707146 taagatgggtttaggagggaaattagagagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 15707065  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 16000130 - 16000050
Alignment:
Q  3 agatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggatg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16000130 agatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagcattaatagtaaaggatg 16000050  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 14586316 - 14586234
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggatg 83  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  14586316 taagatgagtttaggagggaaattagggagtgactagggctaaggtgacaatgcatcaagtctagcgttaatagtaaaggatg 14586234  T

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Target: scaffold0642 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3891 - 3810
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3891 taagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 3810  T

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Target: scaffold0345 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13803 - 13722
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13803 taagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 13722  T

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Target: scaffold0105 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25178 - 25259
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25178 taagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 25259  T

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Target: scaffold0076 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1848 - 1929
Alignment:
Q  1 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1848 taagatgggtttaggagggaaattagggagtgattagggctaaggtgacaactcatcaagtctagcgttaatagtaaaggat 1929  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 42580624 - 42580547
Alignment:
Q  5 atgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||  ||| || ||| ||||||||    
T  42580624 atgggattaggagggaaattagggagagattagggcaaaggtgccagctcatcaagttgagcgtttataataaaggat 42580547  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 27765351 - 27765318
Alignment:
Q  49 cagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||||||||||||||||||||||| ||||||||    
T  27765351 cagctcatcaagtctagctttaataataaaggat 27765318  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 12606643 - 12606711
Alignment:
Q  14 ggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 82  Q
    ||||||||| || |||||||||||||| |   || |||| |||||||||| ||||| ||||||||||||    
T  12606643 ggagggaaaataaggagtgattagggcaacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

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