View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_44 (Length: 384)
Name: NF15302_low_44
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 140 - 363
Target Start/End: Original strand, 21624142 - 21624363
Alignment:
| Q |
140 |
tttctttcttaaaatttagacggggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcatgcatgtttaaattg |
239 |
Q |
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| T |
21624142 |
tttctttcttaaaatttagaccgggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgcacgcatgtttaaattg |
21624241 |
T |
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| Q |
240 |
tatttcatccaacgtaagactctttgacgttattctttaaaacattggatcctaatgtccaccctccattcttcttggaaatttaacatttcatgttttg |
339 |
Q |
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| T |
21624242 |
tatttcatctaa-gtaagactc-ttgacgttattctttaaaacattggatcctaatgtccaccctccattcttcttggaaatttaacatttcatgttttg |
21624339 |
T |
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| Q |
340 |
ctttggtgatttggttttatcttg |
363 |
Q |
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| T |
21624340 |
ctttggtgttttggttttatcttg |
21624363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21624017 - 21624113
Alignment:
| Q |
1 |
aagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaatgc |
97 |
Q |
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| T |
21624017 |
aagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaatgc |
21624113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40466224 - 40466130
Alignment:
| Q |
1 |
aagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
95 |
Q |
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| T |
40466224 |
aagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
40466130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28272019 - 28271927
Alignment:
| Q |
1 |
aagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggta |
93 |
Q |
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||||| |||||| ||||||| |||||||| ||||||||||| || || ||||| ||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
28272019 |
aagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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