View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_45 (Length: 379)
Name: NF15302_low_45
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 42087169 - 42086801
Alignment:
| Q |
1 |
ctccatcttcttctccatctttcacagcattccttatcatatccttaatcttacaagcattctctctaatcttcaccccactctcactactctcacccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087169 |
ctccatcttcttctccatctttcacagcattccttatcatatccttaatcttacaagcattctctctaatcttcaccccactctcactactctcacccat |
42087070 |
T |
|
| Q |
101 |
aaccaactcaattttctcaacaatatcttcatacttcacttcacaactctttcctctagcaacctcaacacaaacacccatctcttcttccaacagctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087069 |
aaccaactcaattttctcaacaatatcttcatacttcacttcacaactctttcctctagcaacctcaacacaaacacccatctcttcttccaacagctta |
42086970 |
T |
|
| Q |
201 |
caattaaaaaactgctccgccgccatcggccacccaagaataggtacaccatgactcaatgattccaacactgagttccaaccacaatgactcaaaaacg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42086969 |
caattaaaaaactgctccgccgccatcggccacccaagaataggtacaccatgactcaatgattccaacaccgagttccaaccacaatgactcaaaaacg |
42086870 |
T |
|
| Q |
301 |
cagaaactgatccatgtgataatatctcaacttgtggtgcccaatcatttactattatacctccctttg |
369 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42086869 |
cagaaactgatccatgtgacaatatctcaacttgtggtgcccaatcatttactattatacctctctttg |
42086801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 24462261 - 24462298
Alignment:
| Q |
261 |
gattccaacactgagttccaaccacaatgactcaaaaa |
298 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| |
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| T |
24462261 |
gattccaacactgagttccatccacaatgagtcaaaaa |
24462298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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