View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_48 (Length: 375)
Name: NF15302_low_48
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 35098168 - 35097823
Alignment:
| Q |
14 |
gaacaaccgaaaacaaaagtacatagtataaaataactggtcacttaagagttgagatagtggttcaaagcttgattccttgaggatttagatagtcatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
35098168 |
gaacaaccgaaaacaaaagtacatagtataaaataactagtcacttgagagttgagatagtggttcaaagcttcattccttgaggatttagatggtcatg |
35098069 |
T |
|
| Q |
114 |
tcaaggccttttagagggatggtaacgggttcagtgacatgattcttatacttccaaagcttgaattctccactcacaaaatcatagtaacctcccagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35098068 |
tcaaggccttttagagggatggtaacaggttcagtgacatgattcttatacttccaaagcttgaattctccactcacaaaatcatagtaacctcccaaca |
35097969 |
T |
|
| Q |
214 |
aagctaagttcttgttccttatttctctatcaacatacggatatgtcttcaggttcactaatgaattattcactgattcctgtatatacaaagtggtgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35097968 |
gagctaagttcttgttccttatttctctatcaacatatggatatgtcttcaggttcactaatgagttattcactgattcctgtatatacaaagtggtgac |
35097869 |
T |
|
| Q |
314 |
taattaatgtttaaatttttgaagtatggttgctgaatgaaaatta |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35097868 |
taattaatgtttaaatttttgaagtatggttgttgaatgaaaatta |
35097823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 28 - 312
Target Start/End: Complemental strand, 35103919 - 35103635
Alignment:
| Q |
28 |
aaaagtacatagtataaaataactggtcacttaagagttgagatagtggttcaaagcttgattccttgaggatttagatagtcatgtcaaggccttttag |
127 |
Q |
| |
|
||||||||||| || |||| |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
35103919 |
aaaagtacataata-aaaagaactagtcacttgagagttgagatagtggctcaaagcttgattccttgaggattttgacagtcatgtcaaggtcttttag |
35103821 |
T |
|
| Q |
128 |
aggg-atggtaacgggttcagtgacatgattcttatacttccaaagcttgaattctccactcacaaaatcatagtaacctcccagcaaagctaagttctt |
226 |
Q |
| |
|
|||| || |||| ||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
35103820 |
aggggattgtaatgggtttagtgacatgggtcttatacttccagagcttgaattctccattcacaaaatcatagtaacctcccaatagtgctaagttctt |
35103721 |
T |
|
| Q |
227 |
gttccttatttctctatcaacatacggatatgtcttcaggttcactaatgaattattcactgattcctgtatatacaaagtggtga |
312 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
35103720 |
gttccttacttctctatcaacatatagatatgtcttcaggttcactaatgaattattcactgattcctttatatataaagtggtga |
35103635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 135 - 359
Target Start/End: Complemental strand, 35111137 - 35110913
Alignment:
| Q |
135 |
gtaacgggttcagtgacatgattcttatacttccaaagcttgaattctccactcacaaaatcatagtaacctcccagcaaagctaagttcttgttcctta |
234 |
Q |
| |
|
|||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
35111137 |
gtaatgggttcagtaatatgagtcttatacttccaaaacttgaattctccactcacaaagtcatagtaaccccccaatagtgctaagttcttgttcctta |
35111038 |
T |
|
| Q |
235 |
tttctctatcaacatacggatatgtcttcaggttcactaatgaattattcactgattcctgtatatacaaagtggtgattaattaatgtttaaatttttg |
334 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||| ||| |||| | |||||||| || || ||||| |
|
|
| T |
35111037 |
tttctgcatcaacatatggatatgtctgaaggttcactaatgagttattcactgattcctacatatataaaatggtaactaattaataattgaaattttg |
35110938 |
T |
|
| Q |
335 |
aagtatggttgctgaatgaaaatta |
359 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
35110937 |
aagtatggttgctgaatggaaatta |
35110913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 35103615 - 35103562
Alignment:
| Q |
303 |
aaagtggtgattaattaatgtttaaatttttgaagtatggttgctgaatgaaaa |
356 |
Q |
| |
|
|||||||||| || ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
35103615 |
aaagtggtgactagttaatatttaaatatttgaagtatggttgctgaatgaaaa |
35103562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 11682166 - 11682381
Alignment:
| Q |
53 |
gtcacttaagagttgagatagtggttcaaagcttgattccttgaggatttagatagtcatgtcaaggccttttagagggatggtaacgggttcagtgaca |
152 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11682166 |
gtcacttgagaattgagatagtggttcaaagatcgaatccttgaggatttagatagtcatgtcaaggccttttagagggatggtaacgggtttagtgaca |
11682265 |
T |
|
| Q |
153 |
tgattcttatacttccaaagcttgaattctccactcacaaaatcatagtaacctcccagcaaagctaagttcttgttccttatttctctatcaacatacg |
252 |
Q |
| |
|
||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
11682266 |
tgagtcttatacttccacggcttggattctccattcacaaaatcatagtaacctcccagtagtgctaagttcttgttccttatttatctatcaacatatg |
11682365 |
T |
|
| Q |
253 |
gatatgtcttcaggtt |
268 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11682366 |
gatatgtcttcaggtt |
11682381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 11682381 - 11682454
Alignment:
| Q |
290 |
ttcctgtatatacaaagtggtgattaattaatgtttaaatttttgaa----gtatggttgctgaatgaaaatta |
359 |
Q |
| |
|
|||||||||||| |||||||||| || |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11682381 |
ttcctgtatatataaagtggtgacgaaataatatttaaatttttgaagtatgtatggttgctgaatgaaaatta |
11682454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University