View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15302_low_49 (Length: 374)
Name: NF15302_low_49
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 52408796 - 52408444
Alignment:
| Q |
1 |
tttaattttccttgggcaagaaggtaaaacagaacaaaagccatagcaggaattggaaactaccaaaactcaagcatcatatcattttcataagacagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52408796 |
tttaattttccttgggcaagaaggtaaaacagaacaaaagccatagcaggaattggaaactaccaaaactcaagcatcatatcattttcataagacagtc |
52408697 |
T |
|
| Q |
101 |
tttacacaatattacaataagacagtcttcaacagaaagaaacttggtgcgctaagacattaatagattaacatagcaaataagaagcaataagcaacag |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52408696 |
tttacacaatattacagtaagacagtcttcaacaaaaagaaacttggtgcgctaagacattaatagattaacatagcaaataagaagcaataagcaacag |
52408597 |
T |
|
| Q |
201 |
aggtggagcagttgcggcgtcaaactcttaagctacaaaatcaatcagattattaaattattcgatcattaataaatacaagagcatagcgcacatctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52408596 |
aggtggagcagttgcggcgtcaaactcttaagctacaaaatcaatcagattattaaattattcgatcattaataagtacaagagcatagcgcacatctat |
52408497 |
T |
|
| Q |
301 |
ctgatcacttcaattttataactgtaattctcaaatgaagtgatcaagacatt |
353 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52408496 |
ctgatcgcttcaattttataactgtaattctcaaatgaagtgatcaagacatt |
52408444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University