View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_58 (Length: 340)
Name: NF15302_low_58
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 36312341 - 36312027
Alignment:
| Q |
12 |
gtggagatgttgaattcatatgtaagtgatcttcaaaactgtgctgaaattgattctgcaaaggatttcctaatggaagagattgtagtccttgaggaag |
111 |
Q |
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| T |
36312341 |
gtggagatgttgaattcatatgtaagtgatcttcaaaactgtgctgaaattgattctacaaaggatttcctaatggaagagattgtagtccttgaggaag |
36312242 |
T |
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| Q |
112 |
ctaagttaattggtcttccaaatttcatgccaagaactgcttttctaacattacttcagagaaaagtgaagggcatttctcatatgccaactaattttgt |
211 |
Q |
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| T |
36312241 |
ctaagttaattggtcttccaaatttcatgccaagaactgcttttctaacattacttcagagaaaagtgaagggcatttctcatatgccaactaattttgt |
36312142 |
T |
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| Q |
212 |
tgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaactattaccagttgcaggttgctactcgtagagctgtg |
311 |
Q |
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| T |
36312141 |
tgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaactattaccagttgcaggttgctactcgtagagctgtg |
36312042 |
T |
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| Q |
312 |
gagcatgttattgct |
326 |
Q |
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| T |
36312041 |
gagcatgttattgct |
36312027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 36304801 - 36304504
Alignment:
| Q |
12 |
gtggagatgttgaattcatatgtaagtgatcttcaaaactgtgctgaaattgattctgcaaaggatttcctaatggaagagattgtagtccttgaggaag |
111 |
Q |
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| T |
36304801 |
gtggacatgttgaattcgtatgcaagtgaacttcaaaacagtgctgaaagtaatgccactaaggatttcctcatggaggagatcaaagttcttgaggaag |
36304702 |
T |
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| Q |
112 |
ctaagttaattggtcttccaaatttcatgccaagaactgcttttctaacattacttcagagaaaagtgaagggcatttctcatatgccaactaattttgt |
211 |
Q |
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| T |
36304701 |
ccaaattcattggtcttccgaatttcatgccaagaactgcttttttgactttacttcagaaaaaagttaggggcatttcttatatgccaattaattttgt |
36304602 |
T |
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| Q |
212 |
tgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaactattaccagttgcaggttgctactcgtagagctg |
309 |
Q |
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| T |
36304601 |
tgaaagtgtatggaattatctggaaactgttgtagtttcggttttgaatcgtcattctgctaactattatcagcttcaggtttcaattcgtagagctg |
36304504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 36289750 - 36289640
Alignment:
| Q |
120 |
attggtcttccaaatttcatgccaagaactgcttttctaacattacttcagagaaaagtgaagggcatttctcatatgccaactaattttgttgacaatg |
219 |
Q |
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| T |
36289750 |
attggtctaccaaacttcatgccaagaactgcatttttgacaatactgcagagaaaagttaagggcatttcttatatgccagttaactttgtggataatg |
36289651 |
T |
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| Q |
220 |
tgtggagctat |
230 |
Q |
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| |||| |||| |
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| T |
36289650 |
tttggaactat |
36289640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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