View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15302_low_6 (Length: 662)
Name: NF15302_low_6
Description: NF15302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15302_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 45 - 473
Target Start/End: Complemental strand, 44783369 - 44782943
Alignment:
| Q |
45 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
144 |
Q |
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| T |
44783369 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
44783270 |
T |
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| Q |
145 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaacctatgttgaactgacaattgatgtttactttgttttt |
244 |
Q |
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| T |
44783269 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaac-tatgttgaactgacaattgatgtttactttgttttt |
44783171 |
T |
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| Q |
245 |
gggannnnnnnnncctttgtttgacatttcctccctatgctcgtattgcgattcatcgtaagcggttgaaattttaggttcataatcttctcttcttaaa |
344 |
Q |
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| T |
44783170 |
gggatttttttt-cctttgtttgacatttcctccctatgctcgtattgcgattcatcgtaagcggttgaaattttaggttcataatcttctcttcttaaa |
44783072 |
T |
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| Q |
345 |
tgaaactttttaccggttgttgaaaacatgtttggcattaatagactattagttgtatcagcaagaaatacatgaaatgtgagacttatatggatcattc |
444 |
Q |
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| T |
44783071 |
tgaaactttttaccggttgttgaaaacatgtttggcattaatagactattagttgtatcagcaagaaatacatgaaatgtgagacttgtatggatcattc |
44782972 |
T |
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| Q |
445 |
atttctccatccgtctatatttttccttt |
473 |
Q |
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| T |
44782971 |
atttctccatccgtctatatttttccttt |
44782943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 484 - 647
Target Start/End: Complemental strand, 44782885 - 44782722
Alignment:
| Q |
484 |
attgtatatcattttatattagaaaacacgttgaatgaatattttatatggagctactcatcttgataaccaaaaacatgtgtcttttactaacatattc |
583 |
Q |
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| T |
44782885 |
attgtatatcattttatattagaaaacacgttgaatgaatattttatatggagctactcatcttgataaccaaaaacatgtgtcttttactaacatattc |
44782786 |
T |
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| Q |
584 |
aacattatgtacatgccttgttgaagtagttagtgataccagttaatataaatttgagataact |
647 |
Q |
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| T |
44782785 |
aacactatgtacatgccttgttgaagtagttagtgataccagttaatataaatttgagataact |
44782722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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